miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16126 3' -62.9 NC_004065.1 + 101530 0.66 0.744489
Target:  5'- cGGCGUcuAUGcCGGCGcagauaacGCgCGCGGguAGCGGu -3'
miRNA:   3'- uCCGCA--UGC-GCCGU--------CG-GCGCC--UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 162472 0.66 0.744489
Target:  5'- aAGGCcucGCGCGGcCGGCCaggacgaGGAGCGc -3'
miRNA:   3'- -UCCGca-UGCGCC-GUCGGcg-----CCUCGCc -5'
16126 3' -62.9 NC_004065.1 + 198017 0.66 0.744489
Target:  5'- uGGCcu-CGgaGGCGGUCGCGGucgccGGCGGu -3'
miRNA:   3'- uCCGcauGCg-CCGUCGGCGCC-----UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 88444 0.66 0.744489
Target:  5'- -cGCGUugGUGGCGGUCGCcucgcgcagagaGGccAGCGa -3'
miRNA:   3'- ucCGCAugCGCCGUCGGCG------------CC--UCGCc -5'
16126 3' -62.9 NC_004065.1 + 223763 0.66 0.744489
Target:  5'- -cGCGgggAUGCGGaCGGCCGC-GAGCu- -3'
miRNA:   3'- ucCGCa--UGCGCC-GUCGGCGcCUCGcc -5'
16126 3' -62.9 NC_004065.1 + 137535 0.66 0.741795
Target:  5'- aAGGCGggacuucCGgucagccucuggccCGGCAcaucGCCGCGGAagGCGGg -3'
miRNA:   3'- -UCCGCau-----GC--------------GCCGU----CGGCGCCU--CGCC- -5'
16126 3' -62.9 NC_004065.1 + 115576 0.66 0.735481
Target:  5'- uGGUGagACgGCGGUGGUgGUGGcGGCGGg -3'
miRNA:   3'- uCCGCa-UG-CGCCGUCGgCGCC-UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 87610 0.66 0.735481
Target:  5'- cGGCGcGC-CGGCAGgcgaaagauggcCCGCGcGAGCGc -3'
miRNA:   3'- uCCGCaUGcGCCGUC------------GGCGC-CUCGCc -5'
16126 3' -62.9 NC_004065.1 + 78676 0.66 0.735481
Target:  5'- cGGCGc-CGCGGC-GCC-CGaGAGCGa -3'
miRNA:   3'- uCCGCauGCGCCGuCGGcGC-CUCGCc -5'
16126 3' -62.9 NC_004065.1 + 90958 0.66 0.734576
Target:  5'- cGGGCcagACG-GGCAcGCUGCGGucggaaaaccucuGGCGGa -3'
miRNA:   3'- -UCCGca-UGCgCCGU-CGGCGCC-------------UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 76738 0.66 0.732764
Target:  5'- cGGCGgggacggGCGCGGC-GCCgGCGGccucgucaucguccGGCGc -3'
miRNA:   3'- uCCGCa------UGCGCCGuCGG-CGCC--------------UCGCc -5'
16126 3' -62.9 NC_004065.1 + 77784 0.66 0.73004
Target:  5'- uGGCGUgcucguaccgcgacaACGUGuuccugcaGCAGCUGCGgGAGCGc -3'
miRNA:   3'- uCCGCA---------------UGCGC--------CGUCGGCGC-CUCGCc -5'
16126 3' -62.9 NC_004065.1 + 195153 0.66 0.73004
Target:  5'- cAGGUccACGcCGcGCAGCaCGCGGAucucggagcgucucuGCGGg -3'
miRNA:   3'- -UCCGcaUGC-GC-CGUCG-GCGCCU---------------CGCC- -5'
16126 3' -62.9 NC_004065.1 + 136484 0.66 0.726397
Target:  5'- gGGGagccgagGC-CGGUAGCCGgGGAGCuGGu -3'
miRNA:   3'- -UCCgca----UGcGCCGUCGGCgCCUCG-CC- -5'
16126 3' -62.9 NC_004065.1 + 136549 0.66 0.725485
Target:  5'- uGGgGUccggggagccgagGC-CGGUAGCCGgGGAGCuGGu -3'
miRNA:   3'- uCCgCA-------------UGcGCCGUCGGCgCCUCG-CC- -5'
16126 3' -62.9 NC_004065.1 + 99543 0.66 0.722743
Target:  5'- cGGCGcucccgucucgcCGCGGCggacGGCCGUGGuGCGu -3'
miRNA:   3'- uCCGCau----------GCGCCG----UCGGCGCCuCGCc -5'
16126 3' -62.9 NC_004065.1 + 152280 0.66 0.720912
Target:  5'- cAGGUcgaggagcucgcccaGUccUGCGGCGGCgGCGGugccGGCGGg -3'
miRNA:   3'- -UCCG---------------CAu-GCGCCGUCGgCGCC----UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 200308 0.66 0.717243
Target:  5'- cGGCGgaACGCaGGCAGagguaccagcCCGuCGGGGCGc -3'
miRNA:   3'- uCCGCa-UGCG-CCGUC----------GGC-GCCUCGCc -5'
16126 3' -62.9 NC_004065.1 + 133747 0.66 0.717243
Target:  5'- gAGGCGUGCGacuucuucaGGCAacCCGgGGAaucccgacuGCGGg -3'
miRNA:   3'- -UCCGCAUGCg--------CCGUc-GGCgCCU---------CGCC- -5'
16126 3' -62.9 NC_004065.1 + 68660 0.66 0.717243
Target:  5'- gAGGCGUACGC-GCAGUCgGCGuacGAGUc- -3'
miRNA:   3'- -UCCGCAUGCGcCGUCGG-CGC---CUCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.