miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16126 3' -62.9 NC_004065.1 + 135056 1.1 0.00107
Target:  5'- cAGGCGUACGCGGCAGCCGCGGAGCGGg -3'
miRNA:   3'- -UCCGCAUGCGCCGUCGGCGCCUCGCC- -5'
16126 3' -62.9 NC_004065.1 + 171960 0.83 0.079365
Target:  5'- cGGGCGgugGCgGCGGCGGCgGCGGAGgGGu -3'
miRNA:   3'- -UCCGCa--UG-CGCCGUCGgCGCCUCgCC- -5'
16126 3' -62.9 NC_004065.1 + 80790 0.82 0.089753
Target:  5'- cAGGCGacgGCgGCGGCGGCgGCGGcAGCGGg -3'
miRNA:   3'- -UCCGCa--UG-CGCCGUCGgCGCC-UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 31068 0.8 0.117317
Target:  5'- cGGCGUACgccuuccucaugGCGGCGGCCuuggccgccaggGUGGAGCGGg -3'
miRNA:   3'- uCCGCAUG------------CGCCGUCGG------------CGCCUCGCC- -5'
16126 3' -62.9 NC_004065.1 + 120548 0.8 0.132305
Target:  5'- cGGUGUGCcgGCGGCGGUCgGCGcGAGCGGg -3'
miRNA:   3'- uCCGCAUG--CGCCGUCGG-CGC-CUCGCC- -5'
16126 3' -62.9 NC_004065.1 + 100753 0.79 0.13878
Target:  5'- cAGuCGUAgcCGCGGUAGCUGUGGGGCGGg -3'
miRNA:   3'- -UCcGCAU--GCGCCGUCGGCGCCUCGCC- -5'
16126 3' -62.9 NC_004065.1 + 154151 0.79 0.142126
Target:  5'- cGGGCGgugGCGGCGGCgGCGGcGGCGGc -3'
miRNA:   3'- -UCCGCaugCGCCGUCGgCGCC-UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 91203 0.79 0.142126
Target:  5'- cGGCGUGCGCGGCAucggcGCCGCcGGAGaaGa -3'
miRNA:   3'- uCCGCAUGCGCCGU-----CGGCG-CCUCgcC- -5'
16126 3' -62.9 NC_004065.1 + 112559 0.78 0.179843
Target:  5'- cGGUGgcgGCGaGCGGCCGCGGAGcCGGa -3'
miRNA:   3'- uCCGCaugCGC-CGUCGGCGCCUC-GCC- -5'
16126 3' -62.9 NC_004065.1 + 163641 0.77 0.197275
Target:  5'- cGGCGgcgGCGGCGGCaGCGGcAGCGGa -3'
miRNA:   3'- uCCGCaugCGCCGUCGgCGCC-UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 168548 0.77 0.201857
Target:  5'- cGGCGguggugGCaGCGGCGGCgGCGGcgacAGCGGg -3'
miRNA:   3'- uCCGCa-----UG-CGCCGUCGgCGCC----UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 136618 0.75 0.247378
Target:  5'- gGGGCGcugguccgAgGCGGCGGUC-CGGAGCGGc -3'
miRNA:   3'- -UCCGCa-------UgCGCCGUCGGcGCCUCGCC- -5'
16126 3' -62.9 NC_004065.1 + 62394 0.75 0.25237
Target:  5'- cGGCGgGgGUGGCGGCCGCGGAuccagcaccagagGUGGc -3'
miRNA:   3'- uCCGCaUgCGCCGUCGGCGCCU-------------CGCC- -5'
16126 3' -62.9 NC_004065.1 + 164362 0.75 0.25293
Target:  5'- cGGGCGUcggaucuuccUGCGGCGGCaGCGGcAGCGGg -3'
miRNA:   3'- -UCCGCAu---------GCGCCGUCGgCGCC-UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 139850 0.75 0.264341
Target:  5'- gAGGCGgGCGaCGGCggaGGCgGCGGAGcCGGc -3'
miRNA:   3'- -UCCGCaUGC-GCCG---UCGgCGCCUC-GCC- -5'
16126 3' -62.9 NC_004065.1 + 192823 0.75 0.270201
Target:  5'- uGGGCGcUGCGCuugaGGCAGCCGCucucggugacGGcGGCGGa -3'
miRNA:   3'- -UCCGC-AUGCG----CCGUCGGCG----------CC-UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 75776 0.74 0.282235
Target:  5'- gAGGCGgAgGCGGCGGUCGgcgagggGGAGCGGc -3'
miRNA:   3'- -UCCGCaUgCGCCGUCGGCg------CCUCGCC- -5'
16126 3' -62.9 NC_004065.1 + 19759 0.74 0.282235
Target:  5'- gGGGCGUGCGgGGguGUgggCGaCGGAGcCGGa -3'
miRNA:   3'- -UCCGCAUGCgCCguCG---GC-GCCUC-GCC- -5'
16126 3' -62.9 NC_004065.1 + 62087 0.74 0.282235
Target:  5'- gGGGCGacgGCaGCGGCAGCgGCGGucguuacgcucGCGGg -3'
miRNA:   3'- -UCCGCa--UG-CGCCGUCGgCGCCu----------CGCC- -5'
16126 3' -62.9 NC_004065.1 + 70098 0.74 0.294689
Target:  5'- gAGGCG-ACGagcagcacCGGCAGCgGCGGcGGCGGc -3'
miRNA:   3'- -UCCGCaUGC--------GCCGUCGgCGCC-UCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.