miRNA display CGI


Results 21 - 40 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16126 3' -62.9 NC_004065.1 + 68660 0.66 0.717243
Target:  5'- gAGGCGUACGC-GCAGUCgGCGuacGAGUc- -3'
miRNA:   3'- -UCCGCAUGCGcCGUCGG-CGC---CUCGcc -5'
16126 3' -62.9 NC_004065.1 + 61712 0.66 0.716324
Target:  5'- cGGCGUA-GCGGCGGauGCGaGccaugcgcuccuuGGCGGg -3'
miRNA:   3'- uCCGCAUgCGCCGUCggCGC-C-------------UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 184482 0.66 0.708027
Target:  5'- uGGGCGgcugcCGCcGCcGCCGCGGcGcCGGg -3'
miRNA:   3'- -UCCGCau---GCGcCGuCGGCGCCuC-GCC- -5'
16126 3' -62.9 NC_004065.1 + 203124 0.66 0.708027
Target:  5'- cGGCGUGCGguCGaGCGGCCucuggacCGGccGGCGGu -3'
miRNA:   3'- uCCGCAUGC--GC-CGUCGGc------GCC--UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 127419 0.66 0.708027
Target:  5'- cAGGCGUcccgucccagACGUcGCuucGUCGCGGAGCa- -3'
miRNA:   3'- -UCCGCA----------UGCGcCGu--CGGCGCCUCGcc -5'
16126 3' -62.9 NC_004065.1 + 35558 0.66 0.708027
Target:  5'- gAGGCGUGaGCGGCGgcGCCGCcGuGCc- -3'
miRNA:   3'- -UCCGCAUgCGCCGU--CGGCGcCuCGcc -5'
16126 3' -62.9 NC_004065.1 + 101853 0.66 0.707102
Target:  5'- gGGGCGUcggggGCGCuaucGCcGCCGCagacgacgacgccGGGGCGGc -3'
miRNA:   3'- -UCCGCA-----UGCGc---CGuCGGCG-------------CCUCGCC- -5'
16126 3' -62.9 NC_004065.1 + 64885 0.66 0.707102
Target:  5'- cGGCGcGCGuCGGagaagagcggcgcCAGUCGCcGGGCGGg -3'
miRNA:   3'- uCCGCaUGC-GCC-------------GUCGGCGcCUCGCC- -5'
16126 3' -62.9 NC_004065.1 + 70336 0.66 0.698756
Target:  5'- cGGCG-GCGaCGGCGGCga-GGAGCGc -3'
miRNA:   3'- uCCGCaUGC-GCCGUCGgcgCCUCGCc -5'
16126 3' -62.9 NC_004065.1 + 136287 0.66 0.698756
Target:  5'- cGGgGUGCGaGGaaucgAGCCGgGGAGCuGGu -3'
miRNA:   3'- uCCgCAUGCgCCg----UCGGCgCCUCG-CC- -5'
16126 3' -62.9 NC_004065.1 + 32959 0.66 0.698756
Target:  5'- cGGGCGUcgacguCGCGGCGGagcaUGaCGGAggccucGCGGa -3'
miRNA:   3'- -UCCGCAu-----GCGCCGUCg---GC-GCCU------CGCC- -5'
16126 3' -62.9 NC_004065.1 + 488 0.67 0.689437
Target:  5'- cGGGcCGcGCGCcGCGuCCGCGGgaaGGCGGg -3'
miRNA:   3'- -UCC-GCaUGCGcCGUcGGCGCC---UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 127977 0.67 0.689437
Target:  5'- cGGCGcuaACGCccGGCcGCCGCGGgucaccgaGGUGGc -3'
miRNA:   3'- uCCGCa--UGCG--CCGuCGGCGCC--------UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 83100 0.67 0.689437
Target:  5'- gAGaGCGcACGCGGCGGaagaugCGCGGGgagcuGUGGg -3'
miRNA:   3'- -UC-CGCaUGCGCCGUCg-----GCGCCU-----CGCC- -5'
16126 3' -62.9 NC_004065.1 + 83580 0.67 0.689437
Target:  5'- cGGCGacgGCGgGGaAGCCGgGGAagaagacggagcGCGGg -3'
miRNA:   3'- uCCGCa--UGCgCCgUCGGCgCCU------------CGCC- -5'
16126 3' -62.9 NC_004065.1 + 83947 0.67 0.689437
Target:  5'- uAGGCGUGCGU----GuuGCGGuAGCGGc -3'
miRNA:   3'- -UCCGCAUGCGccguCggCGCC-UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 72479 0.67 0.689437
Target:  5'- cGGUGUcgGCGCGGCugaAGaCCGgGGAgaagGUGGa -3'
miRNA:   3'- uCCGCA--UGCGCCG---UC-GGCgCCU----CGCC- -5'
16126 3' -62.9 NC_004065.1 + 114818 0.67 0.687568
Target:  5'- cGGCGguaugccccguCGCGGCGGCCaCGGc-CGGa -3'
miRNA:   3'- uCCGCau---------GCGCCGUCGGcGCCucGCC- -5'
16126 3' -62.9 NC_004065.1 + 130070 0.67 0.680078
Target:  5'- cGGCGUuucGCaGCaGCAGCCGCcGccgcGGCGGu -3'
miRNA:   3'- uCCGCA---UG-CGcCGUCGGCGcC----UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 114866 0.67 0.680078
Target:  5'- uGGCG-ACGaCGGU-GCCGCcGGccGGCGGu -3'
miRNA:   3'- uCCGCaUGC-GCCGuCGGCG-CC--UCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.