miRNA display CGI


Results 1 - 20 of 173 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16126 3' -62.9 NC_004065.1 + 488 0.67 0.689437
Target:  5'- cGGGcCGcGCGCcGCGuCCGCGGgaaGGCGGg -3'
miRNA:   3'- -UCC-GCaUGCGcCGUcGGCGCC---UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 4381 0.73 0.355994
Target:  5'- cGGCGgcgGCGGgAGCCGgagugcuguuCGGAGCGGu -3'
miRNA:   3'- uCCGCaugCGCCgUCGGC----------GCCUCGCC- -5'
16126 3' -62.9 NC_004065.1 + 18148 0.73 0.327684
Target:  5'- cGGGaUGUugGCGGUAucGuCCGCGGGGCGu -3'
miRNA:   3'- -UCC-GCAugCGCCGU--C-GGCGCCUCGCc -5'
16126 3' -62.9 NC_004065.1 + 19759 0.74 0.282235
Target:  5'- gGGGCGUGCGgGGguGUgggCGaCGGAGcCGGa -3'
miRNA:   3'- -UCCGCAUGCgCCguCG---GC-GCCUC-GCC- -5'
16126 3' -62.9 NC_004065.1 + 20875 0.67 0.670684
Target:  5'- gAGGCGaGCGacaCGGCCGCGGcGCuGGg -3'
miRNA:   3'- -UCCGCaUGCgccGUCGGCGCCuCG-CC- -5'
16126 3' -62.9 NC_004065.1 + 24530 0.68 0.613995
Target:  5'- uGGCG---GCGGCAGCgaCGaCGGcAGCGGa -3'
miRNA:   3'- uCCGCaugCGCCGUCG--GC-GCC-UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 26359 0.68 0.62345
Target:  5'- cGGCGcugGCGaCGGCGGCgGggauaCGGGGCGu -3'
miRNA:   3'- uCCGCa--UGC-GCCGUCGgC-----GCCUCGCc -5'
16126 3' -62.9 NC_004065.1 + 26955 0.72 0.409539
Target:  5'- cGGCGgcCGCGGCgGGCUcCGGAGCu- -3'
miRNA:   3'- uCCGCauGCGCCG-UCGGcGCCUCGcc -5'
16126 3' -62.9 NC_004065.1 + 27842 0.72 0.37078
Target:  5'- uGGCuGgcCGUGGU-GCCGCGGGGCGa -3'
miRNA:   3'- uCCG-CauGCGCCGuCGGCGCCUCGCc -5'
16126 3' -62.9 NC_004065.1 + 28473 0.7 0.493192
Target:  5'- cGGCGaguUGUGGCGucuggccgacagcGCCGCGGAGCu- -3'
miRNA:   3'- uCCGCau-GCGCCGU-------------CGGCGCCUCGcc -5'
16126 3' -62.9 NC_004065.1 + 29564 0.71 0.456669
Target:  5'- cAGGCc-GCGCucccgcuaucugacGGCGGCCGCGGugaccGCGGu -3'
miRNA:   3'- -UCCGcaUGCG--------------CCGUCGGCGCCu----CGCC- -5'
16126 3' -62.9 NC_004065.1 + 29970 0.74 0.314167
Target:  5'- cGGUGcugGCgGCGGCGGCgGCGGcAGUGGu -3'
miRNA:   3'- uCCGCa--UG-CGCCGUCGgCGCC-UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 30136 0.7 0.511951
Target:  5'- aGGGCGggugGCGGagcgaccggaccCAGCCGCGGgauguAGCGGc -3'
miRNA:   3'- -UCCGCaug-CGCC------------GUCGGCGCC-----UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 30514 0.7 0.467822
Target:  5'- -cGCGcACGUGGCGGCCGCcGcGUGGg -3'
miRNA:   3'- ucCGCaUGCGCCGUCGGCGcCuCGCC- -5'
16126 3' -62.9 NC_004065.1 + 31068 0.8 0.117317
Target:  5'- cGGCGUACgccuuccucaugGCGGCGGCCuuggccgccaggGUGGAGCGGg -3'
miRNA:   3'- uCCGCAUG------------CGCCGUCGG------------CGCCUCGCC- -5'
16126 3' -62.9 NC_004065.1 + 32456 0.69 0.520988
Target:  5'- gAGGUGUACGCGuGCcGCCGaCGGcAGUu- -3'
miRNA:   3'- -UCCGCAUGCGC-CGuCGGC-GCC-UCGcc -5'
16126 3' -62.9 NC_004065.1 + 32959 0.66 0.698756
Target:  5'- cGGGCGUcgacguCGCGGCGGagcaUGaCGGAggccucGCGGa -3'
miRNA:   3'- -UCCGCAu-----GCGCCGUCg---GC-GCCU------CGCC- -5'
16126 3' -62.9 NC_004065.1 + 35558 0.66 0.708027
Target:  5'- gAGGCGUGaGCGGCGgcGCCGCcGuGCc- -3'
miRNA:   3'- -UCCGCAUgCGCCGU--CGGCGcCuCGcc -5'
16126 3' -62.9 NC_004065.1 + 35594 0.7 0.466097
Target:  5'- uGGCGUcggcggugucgguGCGggauccaCGGCGGCgGCGGcGGCGGg -3'
miRNA:   3'- uCCGCA-------------UGC-------GCCGUCGgCGCC-UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 36109 0.68 0.613995
Target:  5'- uGGCGgcaACGgGGCcGCUGCcGGcGGCGGu -3'
miRNA:   3'- uCCGCa--UGCgCCGuCGGCG-CC-UCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.