miRNA display CGI


Results 1 - 20 of 173 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16126 3' -62.9 NC_004065.1 + 168620 0.72 0.37078
Target:  5'- cGGCugcugGCGCuGguGCCGCGG-GCGGa -3'
miRNA:   3'- uCCGca---UGCGcCguCGGCGCCuCGCC- -5'
16126 3' -62.9 NC_004065.1 + 70098 0.74 0.294689
Target:  5'- gAGGCG-ACGagcagcacCGGCAGCgGCGGcGGCGGc -3'
miRNA:   3'- -UCCGCaUGC--------GCCGUCGgCGCC-UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 29970 0.74 0.314167
Target:  5'- cGGUGcugGCgGCGGCGGCgGCGGcAGUGGu -3'
miRNA:   3'- uCCGCa--UG-CGCCGUCGgCGCC-UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 18148 0.73 0.327684
Target:  5'- cGGGaUGUugGCGGUAucGuCCGCGGGGCGu -3'
miRNA:   3'- -UCC-GCAugCGCCGU--C-GGCGCCUCGCc -5'
16126 3' -62.9 NC_004065.1 + 128730 0.73 0.327684
Target:  5'- gAGGCGgcugGCcccgaGGCAGCCGuCGGcAGCGGc -3'
miRNA:   3'- -UCCGCa---UGcg---CCGUCGGC-GCC-UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 45539 0.73 0.341627
Target:  5'- cGGCGc-CGCGGCGGCgGCGGcAGCc- -3'
miRNA:   3'- uCCGCauGCGCCGUCGgCGCC-UCGcc -5'
16126 3' -62.9 NC_004065.1 + 66324 0.73 0.348758
Target:  5'- cGGCGgacaACGCGG-AGCUGgaGGAGCGGc -3'
miRNA:   3'- uCCGCa---UGCGCCgUCGGCg-CCUCGCC- -5'
16126 3' -62.9 NC_004065.1 + 67669 0.73 0.348758
Target:  5'- cGGgGa--GCGGCGGCgGCGGcGGCGGg -3'
miRNA:   3'- uCCgCaugCGCCGUCGgCGCC-UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 139591 0.73 0.351639
Target:  5'- gAGGUGgcCGCGGCgaucgccguuggcaaGGCgcagaUGCGGAGCGGu -3'
miRNA:   3'- -UCCGCauGCGCCG---------------UCG-----GCGCCUCGCC- -5'
16126 3' -62.9 NC_004065.1 + 75776 0.74 0.282235
Target:  5'- gAGGCGgAgGCGGCGGUCGgcgagggGGAGCGGc -3'
miRNA:   3'- -UCCGCaUgCGCCGUCGGCg------CCUCGCC- -5'
16126 3' -62.9 NC_004065.1 + 62087 0.74 0.282235
Target:  5'- gGGGCGacgGCaGCGGCAGCgGCGGucguuacgcucGCGGg -3'
miRNA:   3'- -UCCGCa--UG-CGCCGUCGgCGCCu----------CGCC- -5'
16126 3' -62.9 NC_004065.1 + 19759 0.74 0.282235
Target:  5'- gGGGCGUGCGgGGguGUgggCGaCGGAGcCGGa -3'
miRNA:   3'- -UCCGCAUGCgCCguCG---GC-GCCUC-GCC- -5'
16126 3' -62.9 NC_004065.1 + 31068 0.8 0.117317
Target:  5'- cGGCGUACgccuuccucaugGCGGCGGCCuuggccgccaggGUGGAGCGGg -3'
miRNA:   3'- uCCGCAUG------------CGCCGUCGG------------CGCCUCGCC- -5'
16126 3' -62.9 NC_004065.1 + 120548 0.8 0.132305
Target:  5'- cGGUGUGCcgGCGGCGGUCgGCGcGAGCGGg -3'
miRNA:   3'- uCCGCAUG--CGCCGUCGG-CGC-CUCGCC- -5'
16126 3' -62.9 NC_004065.1 + 100753 0.79 0.13878
Target:  5'- cAGuCGUAgcCGCGGUAGCUGUGGGGCGGg -3'
miRNA:   3'- -UCcGCAU--GCGCCGUCGGCGCCUCGCC- -5'
16126 3' -62.9 NC_004065.1 + 91203 0.79 0.142126
Target:  5'- cGGCGUGCGCGGCAucggcGCCGCcGGAGaaGa -3'
miRNA:   3'- uCCGCAUGCGCCGU-----CGGCG-CCUCgcC- -5'
16126 3' -62.9 NC_004065.1 + 154151 0.79 0.142126
Target:  5'- cGGGCGgugGCGGCGGCgGCGGcGGCGGc -3'
miRNA:   3'- -UCCGCaugCGCCGUCGgCGCC-UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 163641 0.77 0.197275
Target:  5'- cGGCGgcgGCGGCGGCaGCGGcAGCGGa -3'
miRNA:   3'- uCCGCaugCGCCGUCGgCGCC-UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 168548 0.77 0.201857
Target:  5'- cGGCGguggugGCaGCGGCGGCgGCGGcgacAGCGGg -3'
miRNA:   3'- uCCGCa-----UG-CGCCGUCGgCGCC----UCGCC- -5'
16126 3' -62.9 NC_004065.1 + 62394 0.75 0.25237
Target:  5'- cGGCGgGgGUGGCGGCCGCGGAuccagcaccagagGUGGc -3'
miRNA:   3'- uCCGCaUgCGCCGUCGGCGCCU-------------CGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.