miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 60114 0.66 0.560611
Target:  5'- aGAaGCgGCCGGCCGCGUacaGGCUCUu -3'
miRNA:   3'- aCUgCG-CGGCCGGCGCGgg-CUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 96852 0.66 0.560611
Target:  5'- cGGCGCGCUGucGCCGCGggcgccguUCUGGCCgUGg -3'
miRNA:   3'- aCUGCGCGGC--CGGCGC--------GGGCUGGgGC- -5'
16127 5' -67.3 NC_004065.1 + 150471 0.66 0.560611
Target:  5'- gGAaGCGCC-GCUGCGCCgcauCGACCgCCu -3'
miRNA:   3'- aCUgCGCGGcCGGCGCGG----GCUGG-GGc -5'
16127 5' -67.3 NC_004065.1 + 229504 0.66 0.560611
Target:  5'- gGGCGCGCCa-CCGCGUaguaGACuCCCa -3'
miRNA:   3'- aCUGCGCGGccGGCGCGgg--CUG-GGGc -5'
16127 5' -67.3 NC_004065.1 + 188518 0.66 0.560611
Target:  5'- cUGGCGgGaCCGcCCGCGCgcuccccgucCCGacGCCCCGg -3'
miRNA:   3'- -ACUGCgC-GGCcGGCGCG----------GGC--UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 194823 0.66 0.560611
Target:  5'- cGugGCGgUGGCCGCcacguucuccaGgCCGACCaCGg -3'
miRNA:   3'- aCugCGCgGCCGGCG-----------CgGGCUGGgGC- -5'
16127 5' -67.3 NC_004065.1 + 205530 0.66 0.557911
Target:  5'- cGGCGCucaggGCCGGCggcggugccaucuaCGCGCCCauguccgagcuGCCCCa -3'
miRNA:   3'- aCUGCG-----CGGCCG--------------GCGCGGGc----------UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 98768 0.66 0.557011
Target:  5'- aGGCGCGCagaaCGuCCGcCGCCacggagacgaccaGACCCCGa -3'
miRNA:   3'- aCUGCGCG----GCcGGC-GCGGg------------CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 146417 0.66 0.551624
Target:  5'- -uGCGCuCCGGgggcCCGCGCuCCGucuucuuCCCCGg -3'
miRNA:   3'- acUGCGcGGCC----GGCGCG-GGCu------GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 63848 0.66 0.551624
Target:  5'- cUGACGUucGCCauGGCCGCGUUCGGaaggaccaccaCCCGc -3'
miRNA:   3'- -ACUGCG--CGG--CCGGCGCGGGCUg----------GGGC- -5'
16127 5' -67.3 NC_004065.1 + 105926 0.66 0.551624
Target:  5'- cGGCGCugaGCCGGauGgGCCUGcACCCgGg -3'
miRNA:   3'- aCUGCG---CGGCCggCgCGGGC-UGGGgC- -5'
16127 5' -67.3 NC_004065.1 + 90169 0.66 0.551624
Target:  5'- cGGCucCGCCGccuccGCCGuCGCCCGcCuCCCGg -3'
miRNA:   3'- aCUGc-GCGGC-----CGGC-GCGGGCuG-GGGC- -5'
16127 5' -67.3 NC_004065.1 + 104914 0.66 0.551624
Target:  5'- gGugGUGCCGGCgGCGUacaCGcACUaCCGc -3'
miRNA:   3'- aCugCGCGGCCGgCGCGg--GC-UGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 145770 0.66 0.551624
Target:  5'- -cGCGCGCCGGUCGCgggcGCUCGcacagauCCUCa -3'
miRNA:   3'- acUGCGCGGCCGGCG----CGGGCu------GGGGc -5'
16127 5' -67.3 NC_004065.1 + 168566 0.66 0.550727
Target:  5'- aUGGCGCagcgcaucacggaGCgGGUCGgG-CCGGCCCUGg -3'
miRNA:   3'- -ACUGCG-------------CGgCCGGCgCgGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 199720 0.66 0.550727
Target:  5'- cGACGCGaaaaggauccugcCCGacCCGCagGCCCacGACCCCGa -3'
miRNA:   3'- aCUGCGC-------------GGCc-GGCG--CGGG--CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 25216 0.66 0.54268
Target:  5'- gGugGCGCCGauGCCGacgaaGCCCGGgaUCGa -3'
miRNA:   3'- aCugCGCGGC--CGGCg----CGGGCUggGGC- -5'
16127 5' -67.3 NC_004065.1 + 130632 0.66 0.54268
Target:  5'- -aACGCGCCcGCCGCcaggcaGCCC-ACgCCCGu -3'
miRNA:   3'- acUGCGCGGcCGGCG------CGGGcUG-GGGC- -5'
16127 5' -67.3 NC_004065.1 + 76414 0.66 0.54268
Target:  5'- aGugGCGCCGcCCGaG-CCGACCCg- -3'
miRNA:   3'- aCugCGCGGCcGGCgCgGGCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 146565 0.66 0.54268
Target:  5'- cGGCGuCGCgGGUaaggugccgcuCGUGCCgGAgCCCGg -3'
miRNA:   3'- aCUGC-GCGgCCG-----------GCGCGGgCUgGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.