miRNA display CGI


Results 21 - 40 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 145770 0.66 0.551624
Target:  5'- -cGCGCGCCGGUCGCgggcGCUCGcacagauCCUCa -3'
miRNA:   3'- acUGCGCGGCCGGCG----CGGGCu------GGGGc -5'
16127 5' -67.3 NC_004065.1 + 60114 0.66 0.560611
Target:  5'- aGAaGCgGCCGGCCGCGUacaGGCUCUu -3'
miRNA:   3'- aCUgCG-CGGCCGGCGCGgg-CUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 120628 0.66 0.533785
Target:  5'- cGugGCGUCcGCCGCGgCCGACg--- -3'
miRNA:   3'- aCugCGCGGcCGGCGCgGGCUGgggc -5'
16127 5' -67.3 NC_004065.1 + 120401 0.66 0.533785
Target:  5'- gGACGCuGCUccuucGCCGCGUucuucucgcucuCCGACCUCGu -3'
miRNA:   3'- aCUGCG-CGGc----CGGCGCG------------GGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 182709 0.66 0.541788
Target:  5'- cGACGguaccgaCGCUGGUCGCGCCUcuuauACCCaCGu -3'
miRNA:   3'- aCUGC-------GCGGCCGGCGCGGGc----UGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 117166 0.66 0.54268
Target:  5'- cGACaGCGCCGaCgGgGUCCGcCCCUGg -3'
miRNA:   3'- aCUG-CGCGGCcGgCgCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 170447 0.66 0.54268
Target:  5'- gGACGcCGCCGGagGCGCCUucgcuGCCgCCGc -3'
miRNA:   3'- aCUGC-GCGGCCggCGCGGGc----UGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 51525 0.66 0.533785
Target:  5'- aUGACGaCGCC-GUCGCGUCCGAUgaugaagaugaCCUGu -3'
miRNA:   3'- -ACUGC-GCGGcCGGCGCGGGCUG-----------GGGC- -5'
16127 5' -67.3 NC_004065.1 + 92206 0.66 0.533785
Target:  5'- aGACGCG--GGCCGCgaacagGCCCacauCCCCGa -3'
miRNA:   3'- aCUGCGCggCCGGCG------CGGGcu--GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 61468 0.66 0.524942
Target:  5'- gUGAUGCGCUGcGCCaugGCGUCC-ACCaCCa -3'
miRNA:   3'- -ACUGCGCGGC-CGG---CGCGGGcUGG-GGc -5'
16127 5' -67.3 NC_004065.1 + 25554 0.66 0.524942
Target:  5'- cGGCgucgGCGUCGGCCccGCGCCUGAUCaUCa -3'
miRNA:   3'- aCUG----CGCGGCCGG--CGCGGGCUGG-GGc -5'
16127 5' -67.3 NC_004065.1 + 76414 0.66 0.54268
Target:  5'- aGugGCGCCGcCCGaG-CCGACCCg- -3'
miRNA:   3'- aCugCGCGGCcGGCgCgGGCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 96852 0.66 0.560611
Target:  5'- cGGCGCGCUGucGCCGCGggcgccguUCUGGCCgUGg -3'
miRNA:   3'- aCUGCGCGGC--CGGCGC--------GGGCUGGgGC- -5'
16127 5' -67.3 NC_004065.1 + 90169 0.66 0.551624
Target:  5'- cGGCucCGCCGccuccGCCGuCGCCCGcCuCCCGg -3'
miRNA:   3'- aCUGc-GCGGC-----CGGC-GCGGGCuG-GGGC- -5'
16127 5' -67.3 NC_004065.1 + 25216 0.66 0.54268
Target:  5'- gGugGCGCCGauGCCGacgaaGCCCGGgaUCGa -3'
miRNA:   3'- aCugCGCGGC--CGGCg----CGGGCUggGGC- -5'
16127 5' -67.3 NC_004065.1 + 109435 0.66 0.533785
Target:  5'- aGcCGCGCUGGCgGCGCgUGuaucGCCUCa -3'
miRNA:   3'- aCuGCGCGGCCGgCGCGgGC----UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 114227 0.66 0.54268
Target:  5'- cUGACa--CCGGCCGCaGUuuCCGugCCCGg -3'
miRNA:   3'- -ACUGcgcGGCCGGCG-CG--GGCugGGGC- -5'
16127 5' -67.3 NC_004065.1 + 150471 0.66 0.560611
Target:  5'- gGAaGCGCC-GCUGCGCCgcauCGACCgCCu -3'
miRNA:   3'- aCUgCGCGGcCGGCGCGG----GCUGG-GGc -5'
16127 5' -67.3 NC_004065.1 + 169253 0.66 0.516156
Target:  5'- cGAgGCGggaGGCCGCgGCCCugugcGGCCUCGa -3'
miRNA:   3'- aCUgCGCgg-CCGGCG-CGGG-----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 110699 0.66 0.533785
Target:  5'- gUGACGUgaGCCGccGCCGCGaCUCGGCCg-- -3'
miRNA:   3'- -ACUGCG--CGGC--CGGCGC-GGGCUGGggc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.