miRNA display CGI


Results 41 - 60 of 212 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 176786 0.66 0.516156
Target:  5'- cGAuCGCGCCGGCggagCGCGUUgGACCa-- -3'
miRNA:   3'- aCU-GCGCGGCCG----GCGCGGgCUGGggc -5'
16127 5' -67.3 NC_004065.1 + 94372 0.66 0.540006
Target:  5'- cGACGCGCguuaCGGCCGCGgCgagcugucggcuggUGGCgCCGu -3'
miRNA:   3'- aCUGCGCG----GCCGGCGCgG--------------GCUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 132017 0.66 0.516156
Target:  5'- -cACGCGCCGGCgGUGgU-GACCCaCGa -3'
miRNA:   3'- acUGCGCGGCCGgCGCgGgCUGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 202739 0.66 0.524942
Target:  5'- aGACGCGUcguCGGCgGCGCCgccggucucuuCGuCCUCGu -3'
miRNA:   3'- aCUGCGCG---GCCGgCGCGG-----------GCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 110699 0.66 0.533785
Target:  5'- gUGACGUgaGCCGccGCCGCGaCUCGGCCg-- -3'
miRNA:   3'- -ACUGCG--CGGC--CGGCGC-GGGCUGGggc -5'
16127 5' -67.3 NC_004065.1 + 109435 0.66 0.533785
Target:  5'- aGcCGCGCUGGCgGCGCgUGuaucGCCUCa -3'
miRNA:   3'- aCuGCGCGGCCGgCGCGgGC----UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 92206 0.66 0.533785
Target:  5'- aGACGCG--GGCCGCgaacagGCCCacauCCCCGa -3'
miRNA:   3'- aCUGCGCggCCGGCG------CGGGcu--GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 120401 0.66 0.533785
Target:  5'- gGACGCuGCUccuucGCCGCGUucuucucgcucuCCGACCUCGu -3'
miRNA:   3'- aCUGCG-CGGc----CGGCGCG------------GGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 25554 0.66 0.524942
Target:  5'- cGGCgucgGCGUCGGCCccGCGCCUGAUCaUCa -3'
miRNA:   3'- aCUG----CGCGGCCGG--CGCGGGCUGG-GGc -5'
16127 5' -67.3 NC_004065.1 + 61468 0.66 0.524942
Target:  5'- gUGAUGCGCUGcGCCaugGCGUCC-ACCaCCa -3'
miRNA:   3'- -ACUGCGCGGC-CGG---CGCGGGcUGG-GGc -5'
16127 5' -67.3 NC_004065.1 + 113436 0.66 0.524942
Target:  5'- aGA-GCGgCGGCCGggggGCCCGccguGCCCCu -3'
miRNA:   3'- aCUgCGCgGCCGGCg---CGGGC----UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 99224 0.66 0.516156
Target:  5'- ---aGCGCCGGCCagGCGaUCCG-CCUCGc -3'
miRNA:   3'- acugCGCGGCCGG--CGC-GGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 39658 0.66 0.515281
Target:  5'- gGACGCGCCuugGGUCGUgaaagGCCCGucgucgaAUCCCu -3'
miRNA:   3'- aCUGCGCGG---CCGGCG-----CGGGC-------UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 103459 0.66 0.533785
Target:  5'- -cGCGUGCU-GCUGCGCCaCGcGCCCCc -3'
miRNA:   3'- acUGCGCGGcCGGCGCGG-GC-UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 80855 0.66 0.533785
Target:  5'- gGACgaGCGCCaGGCCagGUcUCCGGCCCCc -3'
miRNA:   3'- aCUG--CGCGG-CCGG--CGcGGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 107802 0.66 0.516156
Target:  5'- cGACcCGCCGGCC-CGCUCGAggaCCa -3'
miRNA:   3'- aCUGcGCGGCCGGcGCGGGCUgg-GGc -5'
16127 5' -67.3 NC_004065.1 + 26182 0.67 0.456506
Target:  5'- --cCGUGCCGG-CGCGUCCcuuucGACCUCGa -3'
miRNA:   3'- acuGCGCGGCCgGCGCGGG-----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 50334 0.67 0.464807
Target:  5'- gUGGCaCGCgUGGCCacCGCCgCGAUCCCGa -3'
miRNA:   3'- -ACUGcGCG-GCCGGc-GCGG-GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 196375 0.67 0.490169
Target:  5'- -cGCGCGCCGGacggucgaagCGCGCCCcgaacgcgauGGCCuuGg -3'
miRNA:   3'- acUGCGCGGCCg---------GCGCGGG----------CUGGggC- -5'
16127 5' -67.3 NC_004065.1 + 69416 0.67 0.490169
Target:  5'- cGGgGCGCCaGgUGCGCgCCGACCUg- -3'
miRNA:   3'- aCUgCGCGGcCgGCGCG-GGCUGGGgc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.