miRNA display CGI


Results 61 - 80 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 195764 0.67 0.472346
Target:  5'- cGACgGCGCCGuGUCGCGCugaccauggcggaCCGcggGCCCUGc -3'
miRNA:   3'- aCUG-CGCGGC-CGGCGCG-------------GGC---UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 79104 0.67 0.481642
Target:  5'- cGACaaccCGCCGgaGCCGcCGUCgGACCCCu -3'
miRNA:   3'- aCUGc---GCGGC--CGGC-GCGGgCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 109451 0.67 0.473187
Target:  5'- aGACcgGCGCCGGaggucccgcCCGCucGCgCCGACCgCCGc -3'
miRNA:   3'- aCUG--CGCGGCC---------GGCG--CG-GGCUGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 99908 0.67 0.487603
Target:  5'- uUGAUGCuGCCGGCgucuucuucguccaUGaCGCCgGACCgCCGc -3'
miRNA:   3'- -ACUGCG-CGGCCG--------------GC-GCGGgCUGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 173450 0.67 0.464807
Target:  5'- cGACGUaccGgUGGCgGCGCUCGACgCCa -3'
miRNA:   3'- aCUGCG---CgGCCGgCGCGGGCUGgGGc -5'
16127 5' -67.3 NC_004065.1 + 45101 0.67 0.490169
Target:  5'- aGAC-CGucucCCGGCCGCuCCCGAgccaCCCGg -3'
miRNA:   3'- aCUGcGC----GGCCGGCGcGGGCUg---GGGC- -5'
16127 5' -67.3 NC_004065.1 + 66728 0.67 0.481642
Target:  5'- cUGGCGC-CCGuGCCGU--CgGACCCCGg -3'
miRNA:   3'- -ACUGCGcGGC-CGGCGcgGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 138821 0.67 0.490169
Target:  5'- cGGCgGCGCCGauGCCGCGCacgCCGACggcgcuUCCGc -3'
miRNA:   3'- aCUG-CGCGGC--CGGCGCG---GGCUG------GGGC- -5'
16127 5' -67.3 NC_004065.1 + 182643 0.67 0.490169
Target:  5'- gUGcCGaCGgCGGCCGCGCUgGACUgUGg -3'
miRNA:   3'- -ACuGC-GCgGCCGGCGCGGgCUGGgGC- -5'
16127 5' -67.3 NC_004065.1 + 198920 0.67 0.490169
Target:  5'- gGugGUGCCuGCC-CGCUCcACCCUGg -3'
miRNA:   3'- aCugCGCGGcCGGcGCGGGcUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 94881 0.67 0.490169
Target:  5'- cGACGUccccGUCGucaucacccGCCGCGCCCG-CCCgGu -3'
miRNA:   3'- aCUGCG----CGGC---------CGGCGCGGGCuGGGgC- -5'
16127 5' -67.3 NC_004065.1 + 170079 0.67 0.4936
Target:  5'- cUGGCGgGCaccacuccgggcuucUGGCCGCGCCgCGACaaCGu -3'
miRNA:   3'- -ACUGCgCG---------------GCCGGCGCGG-GCUGggGC- -5'
16127 5' -67.3 NC_004065.1 + 111600 0.67 0.481642
Target:  5'- gGACGcCGCCGuguucGCCgGCGagaUCGAUCCCGa -3'
miRNA:   3'- aCUGC-GCGGC-----CGG-CGCg--GGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 117393 0.67 0.456506
Target:  5'- cGACGC-UCGGCCGCGCgCGcuggGCUCgCGg -3'
miRNA:   3'- aCUGCGcGGCCGGCGCGgGC----UGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 60072 0.67 0.456506
Target:  5'- -uGCGaCGCgGGCCGCGCUCGuCgUCGu -3'
miRNA:   3'- acUGC-GCGgCCGGCGCGGGCuGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 123674 0.67 0.456506
Target:  5'- gUGGCGCGCUGcccguGCagcaGCGCCgGGCCgCCc -3'
miRNA:   3'- -ACUGCGCGGC-----CGg---CGCGGgCUGG-GGc -5'
16127 5' -67.3 NC_004065.1 + 26182 0.67 0.456506
Target:  5'- --cCGUGCCGG-CGCGUCCcuuucGACCUCGa -3'
miRNA:   3'- acuGCGCGGCCgGCGCGGG-----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 50334 0.67 0.464807
Target:  5'- gUGGCaCGCgUGGCCacCGCCgCGAUCCCGa -3'
miRNA:   3'- -ACUGcGCG-GCCGGc-GCGG-GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 114976 0.67 0.490169
Target:  5'- -cGCGCGCC-GuuGCcCUCGGCCCUGg -3'
miRNA:   3'- acUGCGCGGcCggCGcGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 48754 0.67 0.464807
Target:  5'- aGAUGcCGCCGGUgGCGCCgaagagcaucaCGaACCUCGu -3'
miRNA:   3'- aCUGC-GCGGCCGgCGCGG-----------GC-UGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.