miRNA display CGI


Results 101 - 120 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 50334 0.67 0.464807
Target:  5'- gUGGCaCGCgUGGCCacCGCCgCGAUCCCGa -3'
miRNA:   3'- -ACUGcGCG-GCCGGc-GCGG-GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 42608 0.67 0.473187
Target:  5'- -aGCGCGCUgGGgUGCGCUCGcCCUCGa -3'
miRNA:   3'- acUGCGCGG-CCgGCGCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 26182 0.67 0.456506
Target:  5'- --cCGUGCCGG-CGCGUCCcuuucGACCUCGa -3'
miRNA:   3'- acuGCGCGGCCgGCGCGGG-----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 75331 0.67 0.481642
Target:  5'- aGACGCGgCGuccGUCGCGUUCGuCCUCGa -3'
miRNA:   3'- aCUGCGCgGC---CGGCGCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 195764 0.67 0.472346
Target:  5'- cGACgGCGCCGuGUCGCGCugaccauggcggaCCGcggGCCCUGc -3'
miRNA:   3'- aCUG-CGCGGC-CGGCGCG-------------GGC---UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 142407 0.67 0.47656
Target:  5'- --uCGCGCgGGCCaucuuucgccugccgGCGCgCCGGCUCCu -3'
miRNA:   3'- acuGCGCGgCCGG---------------CGCG-GGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 43091 0.67 0.473187
Target:  5'- gGACG-GuCCGGgcauCCGCGaCCCGGCgCCGa -3'
miRNA:   3'- aCUGCgC-GGCC----GGCGC-GGGCUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 117393 0.67 0.456506
Target:  5'- cGACGC-UCGGCCGCGCgCGcuggGCUCgCGg -3'
miRNA:   3'- aCUGCGcGGCCGGCGCGgGC----UGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 60072 0.67 0.456506
Target:  5'- -uGCGaCGCgGGCCGCGCUCGuCgUCGu -3'
miRNA:   3'- acUGC-GCGgCCGGCGCGGGCuGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 123674 0.67 0.456506
Target:  5'- gUGGCGCGCUGcccguGCagcaGCGCCgGGCCgCCc -3'
miRNA:   3'- -ACUGCGCGGC-----CGg---CGCGGgCUGG-GGc -5'
16127 5' -67.3 NC_004065.1 + 128578 0.68 0.439337
Target:  5'- aUGACGaggagaacgggucCGCCGGCgGCGaccucuucUCCGACCUCa -3'
miRNA:   3'- -ACUGC-------------GCGGCCGgCGC--------GGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 146815 0.68 0.424126
Target:  5'- gGAUGUGCCuGcCCGgGCCCGAauuUCCCu -3'
miRNA:   3'- aCUGCGCGGcC-GGCgCGGGCU---GGGGc -5'
16127 5' -67.3 NC_004065.1 + 648 0.68 0.432093
Target:  5'- gUGAgUGCGuCCGGCCGCGCguagCGAgcaCCCGc -3'
miRNA:   3'- -ACU-GCGC-GGCCGGCGCGg---GCUg--GGGC- -5'
16127 5' -67.3 NC_004065.1 + 131766 0.68 0.432093
Target:  5'- -cGCGCGCCcagGGCCGcCGuCCCGAgCCg- -3'
miRNA:   3'- acUGCGCGG---CCGGC-GC-GGGCUgGGgc -5'
16127 5' -67.3 NC_004065.1 + 151368 0.68 0.432093
Target:  5'- ---gGCGCCGGCCGCuGCgCUGGCggCCGa -3'
miRNA:   3'- acugCGCGGCCGGCG-CG-GGCUGg-GGC- -5'
16127 5' -67.3 NC_004065.1 + 88939 0.68 0.447468
Target:  5'- aGGCGCGgCGGuaGCuggccagGCCCGcguagugccaGCCCCGg -3'
miRNA:   3'- aCUGCGCgGCCggCG-------CGGGC----------UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 38118 0.68 0.440147
Target:  5'- --uCGUGCCGuacGUCGCGCCgGACUUCGg -3'
miRNA:   3'- acuGCGCGGC---CGGCGCGGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 220762 0.68 0.447468
Target:  5'- aUGACGCGUgCGGUUaaggaaaacccagGC-UCCGACCCCGa -3'
miRNA:   3'- -ACUGCGCG-GCCGG-------------CGcGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 96967 0.68 0.440147
Target:  5'- cUGcCGCGCCuGCUGCGCC-GGCCguCCGu -3'
miRNA:   3'- -ACuGCGCGGcCGGCGCGGgCUGG--GGC- -5'
16127 5' -67.3 NC_004065.1 + 22006 0.68 0.431293
Target:  5'- cGACGgucaucgcCGCCGGCacuaaccCG-GCCaCGGCCCCGg -3'
miRNA:   3'- aCUGC--------GCGGCCG-------GCgCGG-GCUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.