miRNA display CGI


Results 121 - 140 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 109132 0.68 0.408459
Target:  5'- gUGcUGuCGCCGcgagacGCCGC-CCUGACCCCGg -3'
miRNA:   3'- -ACuGC-GCGGC------CGGCGcGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 120352 0.68 0.408459
Target:  5'- cGAUGuCGUCGGagaGCGCCCggagGACCCUGc -3'
miRNA:   3'- aCUGC-GCGGCCgg-CGCGGG----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 61390 0.68 0.400763
Target:  5'- cGcCGCGCCGGCUcCGCCCGcgGCaCCa -3'
miRNA:   3'- aCuGCGCGGCCGGcGCGGGC--UGgGGc -5'
16127 5' -67.3 NC_004065.1 + 45857 0.68 0.400763
Target:  5'- gGACGCGauGGCCGCuCCgacggaggaaGACCCCa -3'
miRNA:   3'- aCUGCGCggCCGGCGcGGg---------CUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 220762 0.68 0.447468
Target:  5'- aUGACGCGUgCGGUUaaggaaaacccagGC-UCCGACCCCGa -3'
miRNA:   3'- -ACUGCGCG-GCCGG-------------CGcGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 71957 0.68 0.400763
Target:  5'- cGACGcCGCCGGUgGaGCCgGGCagCCCGg -3'
miRNA:   3'- aCUGC-GCGGCCGgCgCGGgCUG--GGGC- -5'
16127 5' -67.3 NC_004065.1 + 151368 0.68 0.432093
Target:  5'- ---gGCGCCGGCCGCuGCgCUGGCggCCGa -3'
miRNA:   3'- acugCGCGGCCGGCG-CG-GGCUGg-GGC- -5'
16127 5' -67.3 NC_004065.1 + 85492 0.68 0.432093
Target:  5'- cGACcaugGUGCUGGCCaugucgcugGCGCUCGGCUUCGg -3'
miRNA:   3'- aCUG----CGCGGCCGG---------CGCGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 648 0.68 0.432093
Target:  5'- gUGAgUGCGuCCGGCCGCGCguagCGAgcaCCCGc -3'
miRNA:   3'- -ACU-GCGC-GGCCGGCGCGg---GCUg--GGGC- -5'
16127 5' -67.3 NC_004065.1 + 141351 0.68 0.411564
Target:  5'- gGACGUcguccgcucgcggguGCUGGCgGCGCUCGACUCg- -3'
miRNA:   3'- aCUGCG---------------CGGCCGgCGCGGGCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 181653 0.68 0.413902
Target:  5'- uUGACaucuuCGCCguggucggauacaaGGCCGCGaccucggucuUCCGACCCCGg -3'
miRNA:   3'- -ACUGc----GCGG--------------CCGGCGC----------GGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 212366 0.68 0.448285
Target:  5'- cGAC-CGUCGGUCGUcaUCCGACUCCGg -3'
miRNA:   3'- aCUGcGCGGCCGGCGc-GGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 96967 0.68 0.440147
Target:  5'- cUGcCGCGCCuGCUGCGCC-GGCCguCCGu -3'
miRNA:   3'- -ACuGCGCGGcCGGCGCGGgCUGG--GGC- -5'
16127 5' -67.3 NC_004065.1 + 88939 0.68 0.447468
Target:  5'- aGGCGCGgCGGuaGCuggccagGCCCGcguagugccaGCCCCGg -3'
miRNA:   3'- aCUGCGCgGCCggCG-------CGGGC----------UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 128578 0.68 0.439337
Target:  5'- aUGACGaggagaacgggucCGCCGGCgGCGaccucuucUCCGACCUCa -3'
miRNA:   3'- -ACUGC-------------GCGGCCGgCGC--------GGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 131766 0.68 0.432093
Target:  5'- -cGCGCGCCcagGGCCGcCGuCCCGAgCCg- -3'
miRNA:   3'- acUGCGCGG---CCGGC-GC-GGGCUgGGgc -5'
16127 5' -67.3 NC_004065.1 + 28480 0.69 0.393159
Target:  5'- uUGugGCGuCUGGCCgacaGCGCCgCGgaGCUCCGu -3'
miRNA:   3'- -ACugCGC-GGCCGG----CGCGG-GC--UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 79671 0.69 0.38565
Target:  5'- gGAgGUGCCGaaCGUGCCCGACaUCCGc -3'
miRNA:   3'- aCUgCGCGGCcgGCGCGGGCUG-GGGC- -5'
16127 5' -67.3 NC_004065.1 + 22369 0.69 0.38565
Target:  5'- cGACGacagagagggaGCCGGCCGCGUgCGGcauggagcuguCCCUGg -3'
miRNA:   3'- aCUGCg----------CGGCCGGCGCGgGCU-----------GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 69469 0.69 0.393159
Target:  5'- aUGuCGCGCCGGCUGCGguaCgCGGCCaaCCa -3'
miRNA:   3'- -ACuGCGCGGCCGGCGCg--G-GCUGG--GGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.