Results 41 - 60 of 212 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16127 | 5' | -67.3 | NC_004065.1 | + | 109882 | 0.71 | 0.273043 |
Target: 5'- cGGCGuCGCCgcGGCCGCGUCgGGgggUCCCGg -3' miRNA: 3'- aCUGC-GCGG--CCGGCGCGGgCU---GGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 80291 | 0.7 | 0.308863 |
Target: 5'- cGACGCGCUGGaCCGCuaugaguccgaggGCCggcgcggccgCGGCCCCc -3' miRNA: 3'- aCUGCGCGGCC-GGCG-------------CGG----------GCUGGGGc -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 87610 | 0.7 | 0.3095 |
Target: 5'- cGGCGCGCCGGCagGCGaaagaUGGCCCgCGc -3' miRNA: 3'- aCUGCGCGGCCGg-CGCgg---GCUGGG-GC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 133966 | 0.7 | 0.321794 |
Target: 5'- gGACGgGCaagccuauaucggCGGCCgGgGCCCGugCCCa -3' miRNA: 3'- aCUGCgCG-------------GCCGG-CgCGGGCugGGGc -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 129636 | 0.7 | 0.322451 |
Target: 5'- gGACcCGCCGGCUGCuGCCCaagGACCUg- -3' miRNA: 3'- aCUGcGCGGCCGGCG-CGGG---CUGGGgc -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 196625 | 0.7 | 0.329076 |
Target: 5'- gGAUGCGCCGGggcgaGCGCCUcgagaGGCUCCGc -3' miRNA: 3'- aCUGCGCGGCCgg---CGCGGG-----CUGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 119182 | 0.7 | 0.328409 |
Target: 5'- cGACGCgGgCGGcCCGCGCCCcgcacugGugCCUGg -3' miRNA: 3'- aCUGCG-CgGCC-GGCGCGGG-------CugGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 30984 | 0.7 | 0.3095 |
Target: 5'- gGAUGCGCUcGCCGCGUCgGGCgCUGa -3' miRNA: 3'- aCUGCGCGGcCGGCGCGGgCUGgGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 77962 | 0.7 | 0.328409 |
Target: 5'- gUGACGUcgagccccgagacGCUGGCCGCGgcgagCCG-CCCCGg -3' miRNA: 3'- -ACUGCG-------------CGGCCGGCGCg----GGCuGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 78657 | 0.7 | 0.329076 |
Target: 5'- cGGCcgccaGCGCagCGGCCgGCGCCgCGGCgCCCGa -3' miRNA: 3'- aCUG-----CGCG--GCCGG-CGCGG-GCUG-GGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 223099 | 0.7 | 0.335802 |
Target: 5'- cGGCGgaCGCCgaGGCCGUGCCCGcagcugaaGCCgCCGc -3' miRNA: 3'- aCUGC--GCGG--CCGGCGCGGGC--------UGG-GGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 35559 | 0.7 | 0.335802 |
Target: 5'- aGGCGUGagCGGCgGCGCCgcCGugCCCa -3' miRNA: 3'- aCUGCGCg-GCCGgCGCGG--GCugGGGc -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 203852 | 0.7 | 0.340569 |
Target: 5'- gGACGCGCCGGCaCGgggaauaggacggcUGgCacgcaGACCCCGg -3' miRNA: 3'- aCUGCGCGGCCG-GC--------------GCgGg----CUGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 137479 | 0.7 | 0.342627 |
Target: 5'- -uGCGCGCgCGuGCgCGCGCCCG-CCCg- -3' miRNA: 3'- acUGCGCG-GC-CG-GCGCGGGCuGGGgc -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 94640 | 0.7 | 0.342627 |
Target: 5'- gGGCGCgGCCGG-CGCGUcaCCGuCCCUGa -3' miRNA: 3'- aCUGCG-CGGCCgGCGCG--GGCuGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 120107 | 0.7 | 0.315926 |
Target: 5'- gGACGCGacggCGGCCGCGgCgGAcgagccgggaccCCCCGa -3' miRNA: 3'- aCUGCGCg---GCCGGCGCgGgCU------------GGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 199542 | 0.69 | 0.349552 |
Target: 5'- gGGCGCcuccaGCCGGgCGCGCCCcaucGugCCgCGg -3' miRNA: 3'- aCUGCG-----CGGCCgGCGCGGG----CugGG-GC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 109195 | 0.69 | 0.349552 |
Target: 5'- aGGC-CGgCGGCgGCGCCuCGGCCUCu -3' miRNA: 3'- aCUGcGCgGCCGgCGCGG-GCUGGGGc -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 169569 | 0.69 | 0.378236 |
Target: 5'- -uGCGCGCUGuuGCCGCuGUCgCGGCUCCGg -3' miRNA: 3'- acUGCGCGGC--CGGCG-CGG-GCUGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 69469 | 0.69 | 0.393159 |
Target: 5'- aUGuCGCGCCGGCUGCGguaCgCGGCCaaCCa -3' miRNA: 3'- -ACuGCGCGGCCGGCGCg--G-GCUGG--GGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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