Results 61 - 80 of 212 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16127 | 5' | -67.3 | NC_004065.1 | + | 143225 | 0.69 | 0.378236 |
Target: 5'- aGGcCGCGUUcGCCGCGCCCGuCUUCGc -3' miRNA: 3'- aCU-GCGCGGcCGGCGCGGGCuGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 97318 | 0.69 | 0.393159 |
Target: 5'- -uACGUaaCCaGCCGC-CCCGACCCCGu -3' miRNA: 3'- acUGCGc-GGcCGGCGcGGGCUGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 169569 | 0.69 | 0.378236 |
Target: 5'- -uGCGCGCUGuuGCCGCuGUCgCGGCUCCGg -3' miRNA: 3'- acUGCGCGGC--CGGCG-CGG-GCUGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 132772 | 0.69 | 0.354458 |
Target: 5'- cGGCGCGaaGGUCgccagaagcgccguGCGCCggacgCGACCCCGa -3' miRNA: 3'- aCUGCGCggCCGG--------------CGCGG-----GCUGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 108802 | 0.69 | 0.38119 |
Target: 5'- cUGGCGUGgCGGCCGUucaGCCgcggcaacaggcugaCGGCCUCGg -3' miRNA: 3'- -ACUGCGCgGCCGGCG---CGG---------------GCUGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 22369 | 0.69 | 0.38565 |
Target: 5'- cGACGacagagagggaGCCGGCCGCGUgCGGcauggagcuguCCCUGg -3' miRNA: 3'- aCUGCg----------CGGCCGGCGCGgGCU-----------GGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 109195 | 0.69 | 0.349552 |
Target: 5'- aGGC-CGgCGGCgGCGCCuCGGCCUCu -3' miRNA: 3'- aCUGcGCgGCCGgCGCGG-GCUGGGGc -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 28480 | 0.69 | 0.393159 |
Target: 5'- uUGugGCGuCUGGCCgacaGCGCCgCGgaGCUCCGu -3' miRNA: 3'- -ACugCGC-GGCCGG----CGCGG-GC--UGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 29229 | 0.69 | 0.38565 |
Target: 5'- --cCGCGCCGagacGCCGuCGCCCG-CCaCCGc -3' miRNA: 3'- acuGCGCGGC----CGGC-GCGGGCuGG-GGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 79671 | 0.69 | 0.38565 |
Target: 5'- gGAgGUGCCGaaCGUGCCCGACaUCCGc -3' miRNA: 3'- aCUgCGCGGCcgGCGCGGGCUG-GGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 200389 | 0.69 | 0.378236 |
Target: 5'- gGACGCGUCuacaucuaCGCGCCCGACgUCGa -3' miRNA: 3'- aCUGCGCGGccg-----GCGCGGGCUGgGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 97657 | 0.69 | 0.349552 |
Target: 5'- cGACGCGaCGGCC-UGCCCGugCuaCCGc -3' miRNA: 3'- aCUGCGCgGCCGGcGCGGGCugG--GGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 199542 | 0.69 | 0.349552 |
Target: 5'- gGGCGCcuccaGCCGGgCGCGCCCcaucGugCCgCGg -3' miRNA: 3'- aCUGCG-----CGGCCgGCGCGGG----CugGG-GC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 158158 | 0.69 | 0.363698 |
Target: 5'- cUGuCGCGCugguCGGCCGCGCUUuccgGAUCCCu -3' miRNA: 3'- -ACuGCGCG----GCCGGCGCGGG----CUGGGGc -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 202312 | 0.69 | 0.370918 |
Target: 5'- -aGCGCGCgagcacgGGCCaGaCGCCCGAUCCCu -3' miRNA: 3'- acUGCGCGg------CCGG-C-GCGGGCUGGGGc -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 42057 | 0.69 | 0.378236 |
Target: 5'- cGGCGUGCUGGCgcuggUGUGgCUGACCUCGc -3' miRNA: 3'- aCUGCGCGGCCG-----GCGCgGGCUGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 45857 | 0.68 | 0.400763 |
Target: 5'- gGACGCGauGGCCGCuCCgacggaggaaGACCCCa -3' miRNA: 3'- aCUGCGCggCCGGCGcGGg---------CUGGGGc -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 33385 | 0.68 | 0.423334 |
Target: 5'- -uGCGCGCgGaGCCucucgagGCGCUCG-CCCCGg -3' miRNA: 3'- acUGCGCGgC-CGG-------CGCGGGCuGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 220762 | 0.68 | 0.447468 |
Target: 5'- aUGACGCGUgCGGUUaaggaaaacccagGC-UCCGACCCCGa -3' miRNA: 3'- -ACUGCGCG-GCCGG-------------CGcGGGCUGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 96967 | 0.68 | 0.440147 |
Target: 5'- cUGcCGCGCCuGCUGCGCC-GGCCguCCGu -3' miRNA: 3'- -ACuGCGCGGcCGGCGCGGgCUGG--GGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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