miRNA display CGI


Results 101 - 120 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 66373 0.68 0.424126
Target:  5'- cGGCGCGCugaucgucgagCGGCUGCGCUCG-CUgaCCGa -3'
miRNA:   3'- aCUGCGCG-----------GCCGGCGCGGGCuGG--GGC- -5'
16127 5' -67.3 NC_004065.1 + 112753 0.68 0.424126
Target:  5'- cUGAU-CGCCGGCUcguGCGCCUcuuGCCCCa -3'
miRNA:   3'- -ACUGcGCGGCCGG---CGCGGGc--UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 82096 0.67 0.497041
Target:  5'- cGGCGaCGUCGcagucgaucuccaGCUGCGCCCGGCUgacguauCCGg -3'
miRNA:   3'- aCUGC-GCGGC-------------CGGCGCGGGCUGG-------GGC- -5'
16127 5' -67.3 NC_004065.1 + 69416 0.67 0.490169
Target:  5'- cGGgGCGCCaGgUGCGCgCCGACCUg- -3'
miRNA:   3'- aCUgCGCGGcCgGCGCG-GGCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 123877 0.67 0.489313
Target:  5'- cGcACGCGCCGcaggugcGCCGUGCacguCGucGCCCCGu -3'
miRNA:   3'- aC-UGCGCGGC-------CGGCGCGg---GC--UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 197147 0.67 0.485044
Target:  5'- aGACGCucGCCGG-CGCGCCucuCGAccagggacgccagcuCCCCGc -3'
miRNA:   3'- aCUGCG--CGGCCgGCGCGG---GCU---------------GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 117393 0.67 0.456506
Target:  5'- cGACGC-UCGGCCGCGCgCGcuggGCUCgCGg -3'
miRNA:   3'- aCUGCGcGGCCGGCGCGgGC----UGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 60072 0.67 0.456506
Target:  5'- -uGCGaCGCgGGCCGCGCUCGuCgUCGu -3'
miRNA:   3'- acUGC-GCGgCCGGCGCGGGCuGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 123674 0.67 0.456506
Target:  5'- gUGGCGCGCUGcccguGCagcaGCGCCgGGCCgCCc -3'
miRNA:   3'- -ACUGCGCGGC-----CGg---CGCGGgCUGG-GGc -5'
16127 5' -67.3 NC_004065.1 + 26182 0.67 0.456506
Target:  5'- --cCGUGCCGG-CGCGUCCcuuucGACCUCGa -3'
miRNA:   3'- acuGCGCGGCCgGCGCGGG-----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 198124 0.67 0.481642
Target:  5'- cGACGCGCCGcGUCaG-GCCCGcUCUCGa -3'
miRNA:   3'- aCUGCGCGGC-CGG-CgCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 48754 0.67 0.464807
Target:  5'- aGAUGcCGCCGGUgGCGCCgaagagcaucaCGaACCUCGu -3'
miRNA:   3'- aCUGC-GCGGCCGgCGCGG-----------GC-UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 173450 0.67 0.464807
Target:  5'- cGACGUaccGgUGGCgGCGCUCGACgCCa -3'
miRNA:   3'- aCUGCG---CgGCCGgCGCGGGCUGgGGc -5'
16127 5' -67.3 NC_004065.1 + 191844 0.67 0.472346
Target:  5'- cGugGUGaCGGCCGCGacuaucgCCGcgauggcGCCCCGa -3'
miRNA:   3'- aCugCGCgGCCGGCGCg------GGC-------UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 113702 0.67 0.507429
Target:  5'- cGACGCcgucGCCGcuGCCGC-CgCCGACgCCGa -3'
miRNA:   3'- aCUGCG----CGGC--CGGCGcG-GGCUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 122473 0.67 0.507429
Target:  5'- gUGGCGUcCCGGuaGCGCaCGACCCg- -3'
miRNA:   3'- -ACUGCGcGGCCggCGCGgGCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 133438 0.67 0.464807
Target:  5'- gGGCGCGUCGGCCuCGUucugcgauuguuCCG-CCUCGg -3'
miRNA:   3'- aCUGCGCGGCCGGcGCG------------GGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 50334 0.67 0.464807
Target:  5'- gUGGCaCGCgUGGCCacCGCCgCGAUCCCGa -3'
miRNA:   3'- -ACUGcGCG-GCCGGc-GCGG-GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 130359 0.67 0.507429
Target:  5'- gGACGCuGUCGgcGCCGCGCcgCCGGCUUCu -3'
miRNA:   3'- aCUGCG-CGGC--CGGCGCG--GGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 196375 0.67 0.490169
Target:  5'- -cGCGCGCCGGacggucgaagCGCGCCCcgaacgcgauGGCCuuGg -3'
miRNA:   3'- acUGCGCGGCCg---------GCGCGGG----------CUGGggC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.