miRNA display CGI


Results 21 - 40 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 123772 0.72 0.229895
Target:  5'- -cGCGCGCCGGUCGCcuGUCgGACCCa- -3'
miRNA:   3'- acUGCGCGGCCGGCG--CGGgCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 90630 0.72 0.234957
Target:  5'- -uGCGCGCgGGCCGU-CgCGACCCCa -3'
miRNA:   3'- acUGCGCGgCCGGCGcGgGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 68162 0.72 0.240112
Target:  5'- gUGAuCGCGgCGGCgCGCGCgacggagcugUCGGCCCCGc -3'
miRNA:   3'- -ACU-GCGCgGCCG-GCGCG----------GGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 111771 0.72 0.250704
Target:  5'- cGAgGCGCCGGCgagcuccaCGCGUCCGucgacgGCUCCGa -3'
miRNA:   3'- aCUgCGCGGCCG--------GCGCGGGC------UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 24483 0.72 0.252869
Target:  5'- gGGCGCguagauggcaccgccGCCGGCCcugaGCG-CCGGCCCCa -3'
miRNA:   3'- aCUGCG---------------CGGCCGG----CGCgGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 78479 0.72 0.26168
Target:  5'- --cCGCGCCGcGUcaagCGCGCCCGACaccgCCCGg -3'
miRNA:   3'- acuGCGCGGC-CG----GCGCGGGCUG----GGGC- -5'
16127 5' -67.3 NC_004065.1 + 215659 0.71 0.267312
Target:  5'- cGAUGUuuUGGUggUGCGCCCGAUCCCGa -3'
miRNA:   3'- aCUGCGcgGCCG--GCGCGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 151089 0.71 0.267312
Target:  5'- -cGCGgGCCuGGUgGCGCCCGAgCUCGg -3'
miRNA:   3'- acUGCgCGG-CCGgCGCGGGCUgGGGC- -5'
16127 5' -67.3 NC_004065.1 + 109882 0.71 0.273043
Target:  5'- cGGCGuCGCCgcGGCCGCGUCgGGgggUCCCGg -3'
miRNA:   3'- aCUGC-GCGG--CCGGCGCGGgCU---GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 92068 0.71 0.275362
Target:  5'- -cGCGCGCUcggagGGCCGCGCguugcgccagcagcuCCGAgCCCGg -3'
miRNA:   3'- acUGCGCGG-----CCGGCGCG---------------GGCUgGGGC- -5'
16127 5' -67.3 NC_004065.1 + 40820 0.71 0.278871
Target:  5'- gGACGCGuUCGGCCGCGuCCCuGACgUUGu -3'
miRNA:   3'- aCUGCGC-GGCCGGCGC-GGG-CUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 90120 0.71 0.278871
Target:  5'- cUGGCGcCGCCGGCCG-Ga--GGCCCCGc -3'
miRNA:   3'- -ACUGC-GCGGCCGGCgCgggCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 65380 0.71 0.290824
Target:  5'- cGACGCGC--GCCGCGaCCCGACUguuccuCCGa -3'
miRNA:   3'- aCUGCGCGgcCGGCGC-GGGCUGG------GGC- -5'
16127 5' -67.3 NC_004065.1 + 47289 0.71 0.290824
Target:  5'- cGACGUGUCGGUgGC-CCCGGCgucgCCCGu -3'
miRNA:   3'- aCUGCGCGGCCGgCGcGGGCUG----GGGC- -5'
16127 5' -67.3 NC_004065.1 + 114109 0.71 0.29695
Target:  5'- cGA-GCuGCCGGCCGagGCCgacgaCGGCCCCGa -3'
miRNA:   3'- aCUgCG-CGGCCGGCg-CGG-----GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 40902 0.71 0.29695
Target:  5'- cGcACGCGCCGGCU-UGUCgGGCCCUGa -3'
miRNA:   3'- aC-UGCGCGGCCGGcGCGGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 103768 0.71 0.29695
Target:  5'- cUGaACGCGCUGGgCG-GCUCGAuCCCCGc -3'
miRNA:   3'- -AC-UGCGCGGCCgGCgCGGGCU-GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 149707 0.71 0.303175
Target:  5'- cGGgGgGCCgcGGCCGCG-CCGGCCCuCGg -3'
miRNA:   3'- aCUgCgCGG--CCGGCGCgGGCUGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 125468 0.71 0.303175
Target:  5'- cGGCGUGCacagCGGCCGCaccuGCCCGuuCUCCGu -3'
miRNA:   3'- aCUGCGCG----GCCGGCG----CGGGCu-GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 549 0.71 0.303175
Target:  5'- --cCGCGaCGaGCgGCGCCCGGCCCgGa -3'
miRNA:   3'- acuGCGCgGC-CGgCGCGGGCUGGGgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.