miRNA display CGI


Results 41 - 60 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 223839 0.71 0.305062
Target:  5'- gGACGCGagcgacaacucguacUCGGCCGCccgGCCCGGCCaucucggCCGg -3'
miRNA:   3'- aCUGCGC---------------GGCCGGCG---CGGGCUGG-------GGC- -5'
16127 5' -67.3 NC_004065.1 + 80291 0.7 0.308863
Target:  5'- cGACGCGCUGGaCCGCuaugaguccgaggGCCggcgcggccgCGGCCCCc -3'
miRNA:   3'- aCUGCGCGGCC-GGCG-------------CGG----------GCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 30984 0.7 0.3095
Target:  5'- gGAUGCGCUcGCCGCGUCgGGCgCUGa -3'
miRNA:   3'- aCUGCGCGGcCGGCGCGGgCUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 87610 0.7 0.3095
Target:  5'- cGGCGCGCCGGCagGCGaaagaUGGCCCgCGc -3'
miRNA:   3'- aCUGCGCGGCCGg-CGCgg---GCUGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 120107 0.7 0.315926
Target:  5'- gGACGCGacggCGGCCGCGgCgGAcgagccgggaccCCCCGa -3'
miRNA:   3'- aCUGCGCg---GCCGGCGCgGgCU------------GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 133966 0.7 0.321794
Target:  5'- gGACGgGCaagccuauaucggCGGCCgGgGCCCGugCCCa -3'
miRNA:   3'- aCUGCgCG-------------GCCGG-CgCGGGCugGGGc -5'
16127 5' -67.3 NC_004065.1 + 129636 0.7 0.322451
Target:  5'- gGACcCGCCGGCUGCuGCCCaagGACCUg- -3'
miRNA:   3'- aCUGcGCGGCCGGCG-CGGG---CUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 77962 0.7 0.328409
Target:  5'- gUGACGUcgagccccgagacGCUGGCCGCGgcgagCCG-CCCCGg -3'
miRNA:   3'- -ACUGCG-------------CGGCCGGCGCg----GGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 119182 0.7 0.328409
Target:  5'- cGACGCgGgCGGcCCGCGCCCcgcacugGugCCUGg -3'
miRNA:   3'- aCUGCG-CgGCC-GGCGCGGG-------CugGGGC- -5'
16127 5' -67.3 NC_004065.1 + 196625 0.7 0.329076
Target:  5'- gGAUGCGCCGGggcgaGCGCCUcgagaGGCUCCGc -3'
miRNA:   3'- aCUGCGCGGCCgg---CGCGGG-----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 78657 0.7 0.329076
Target:  5'- cGGCcgccaGCGCagCGGCCgGCGCCgCGGCgCCCGa -3'
miRNA:   3'- aCUG-----CGCG--GCCGG-CGCGG-GCUG-GGGC- -5'
16127 5' -67.3 NC_004065.1 + 223099 0.7 0.335802
Target:  5'- cGGCGgaCGCCgaGGCCGUGCCCGcagcugaaGCCgCCGc -3'
miRNA:   3'- aCUGC--GCGG--CCGGCGCGGGC--------UGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 35559 0.7 0.335802
Target:  5'- aGGCGUGagCGGCgGCGCCgcCGugCCCa -3'
miRNA:   3'- aCUGCGCg-GCCGgCGCGG--GCugGGGc -5'
16127 5' -67.3 NC_004065.1 + 203852 0.7 0.340569
Target:  5'- gGACGCGCCGGCaCGgggaauaggacggcUGgCacgcaGACCCCGg -3'
miRNA:   3'- aCUGCGCGGCCG-GC--------------GCgGg----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 137479 0.7 0.342627
Target:  5'- -uGCGCGCgCGuGCgCGCGCCCG-CCCg- -3'
miRNA:   3'- acUGCGCG-GC-CG-GCGCGGGCuGGGgc -5'
16127 5' -67.3 NC_004065.1 + 94640 0.7 0.342627
Target:  5'- gGGCGCgGCCGG-CGCGUcaCCGuCCCUGa -3'
miRNA:   3'- aCUGCG-CGGCCgGCGCG--GGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 97657 0.69 0.349552
Target:  5'- cGACGCGaCGGCC-UGCCCGugCuaCCGc -3'
miRNA:   3'- aCUGCGCgGCCGGcGCGGGCugG--GGC- -5'
16127 5' -67.3 NC_004065.1 + 109195 0.69 0.349552
Target:  5'- aGGC-CGgCGGCgGCGCCuCGGCCUCu -3'
miRNA:   3'- aCUGcGCgGCCGgCGCGG-GCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 199542 0.69 0.349552
Target:  5'- gGGCGCcuccaGCCGGgCGCGCCCcaucGugCCgCGg -3'
miRNA:   3'- aCUGCG-----CGGCCgGCGCGGG----CugGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 132772 0.69 0.354458
Target:  5'- cGGCGCGaaGGUCgccagaagcgccguGCGCCggacgCGACCCCGa -3'
miRNA:   3'- aCUGCGCggCCGG--------------CGCGG-----GCUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.