miRNA display CGI


Results 61 - 80 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 158158 0.69 0.363698
Target:  5'- cUGuCGCGCugguCGGCCGCGCUUuccgGAUCCCu -3'
miRNA:   3'- -ACuGCGCG----GCCGGCGCGGG----CUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 196540 0.69 0.370918
Target:  5'- aGACGCcuGCCGGCgcguagGCGCCCacGGCCgCGa -3'
miRNA:   3'- aCUGCG--CGGCCGg-----CGCGGG--CUGGgGC- -5'
16127 5' -67.3 NC_004065.1 + 202312 0.69 0.370918
Target:  5'- -aGCGCGCgagcacgGGCCaGaCGCCCGAUCCCu -3'
miRNA:   3'- acUGCGCGg------CCGG-C-GCGGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 200389 0.69 0.378236
Target:  5'- gGACGCGUCuacaucuaCGCGCCCGACgUCGa -3'
miRNA:   3'- aCUGCGCGGccg-----GCGCGGGCUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 42057 0.69 0.378236
Target:  5'- cGGCGUGCUGGCgcuggUGUGgCUGACCUCGc -3'
miRNA:   3'- aCUGCGCGGCCG-----GCGCgGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 143225 0.69 0.378236
Target:  5'- aGGcCGCGUUcGCCGCGCCCGuCUUCGc -3'
miRNA:   3'- aCU-GCGCGGcCGGCGCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 169569 0.69 0.378236
Target:  5'- -uGCGCGCUGuuGCCGCuGUCgCGGCUCCGg -3'
miRNA:   3'- acUGCGCGGC--CGGCG-CGG-GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 108802 0.69 0.38119
Target:  5'- cUGGCGUGgCGGCCGUucaGCCgcggcaacaggcugaCGGCCUCGg -3'
miRNA:   3'- -ACUGCGCgGCCGGCG---CGG---------------GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 99827 0.69 0.38565
Target:  5'- cGAgGaUGCCGGCCaggcguuucaGCGUCUGcGCCCCGa -3'
miRNA:   3'- aCUgC-GCGGCCGG----------CGCGGGC-UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 79671 0.69 0.38565
Target:  5'- gGAgGUGCCGaaCGUGCCCGACaUCCGc -3'
miRNA:   3'- aCUgCGCGGCcgGCGCGGGCUG-GGGC- -5'
16127 5' -67.3 NC_004065.1 + 22369 0.69 0.38565
Target:  5'- cGACGacagagagggaGCCGGCCGCGUgCGGcauggagcuguCCCUGg -3'
miRNA:   3'- aCUGCg----------CGGCCGGCGCGgGCU-----------GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 29229 0.69 0.38565
Target:  5'- --cCGCGCCGagacGCCGuCGCCCG-CCaCCGc -3'
miRNA:   3'- acuGCGCGGC----CGGC-GCGGGCuGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 83398 0.69 0.388642
Target:  5'- gUGACgGCGUucaccaccgaagacaCGGCCcCGCCgaCGGCCCCGa -3'
miRNA:   3'- -ACUG-CGCG---------------GCCGGcGCGG--GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 28480 0.69 0.393159
Target:  5'- uUGugGCGuCUGGCCgacaGCGCCgCGgaGCUCCGu -3'
miRNA:   3'- -ACugCGC-GGCCGG----CGCGG-GC--UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 97318 0.69 0.393159
Target:  5'- -uACGUaaCCaGCCGC-CCCGACCCCGu -3'
miRNA:   3'- acUGCGc-GGcCGGCGcGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 69469 0.69 0.393159
Target:  5'- aUGuCGCGCCGGCUGCGguaCgCGGCCaaCCa -3'
miRNA:   3'- -ACuGCGCGGCCGGCGCg--G-GCUGG--GGc -5'
16127 5' -67.3 NC_004065.1 + 115457 0.68 0.399998
Target:  5'- cGcCGCGCgGGUCGCGaUCCGGaugaugguaucccCCCCGa -3'
miRNA:   3'- aCuGCGCGgCCGGCGC-GGGCU-------------GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 45857 0.68 0.400763
Target:  5'- gGACGCGauGGCCGCuCCgacggaggaaGACCCCa -3'
miRNA:   3'- aCUGCGCggCCGGCGcGGg---------CUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 71957 0.68 0.400763
Target:  5'- cGACGcCGCCGGUgGaGCCgGGCagCCCGg -3'
miRNA:   3'- aCUGC-GCGGCCGgCgCGGgCUG--GGGC- -5'
16127 5' -67.3 NC_004065.1 + 61390 0.68 0.400763
Target:  5'- cGcCGCGCCGGCUcCGCCCGcgGCaCCa -3'
miRNA:   3'- aCuGCGCGGCCGGcGCGGGC--UGgGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.