miRNA display CGI


Results 81 - 100 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 120352 0.68 0.408459
Target:  5'- cGAUGuCGUCGGagaGCGCCCggagGACCCUGc -3'
miRNA:   3'- aCUGC-GCGGCCgg-CGCGGG----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 109132 0.68 0.408459
Target:  5'- gUGcUGuCGCCGcgagacGCCGC-CCUGACCCCGg -3'
miRNA:   3'- -ACuGC-GCGGC------CGGCGcGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 137928 0.68 0.411564
Target:  5'- cUGACGCGCCgGGCuCGgagcugcuggcgcaaCGCgCGGCCCUc -3'
miRNA:   3'- -ACUGCGCGG-CCG-GC---------------GCGgGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 35467 0.68 0.411564
Target:  5'- cGACGCGCUGcGCgGUGCCCGugacgacguucacggGCacgaCCGg -3'
miRNA:   3'- aCUGCGCGGC-CGgCGCGGGC---------------UGg---GGC- -5'
16127 5' -67.3 NC_004065.1 + 141351 0.68 0.411564
Target:  5'- gGACGUcguccgcucgcggguGCUGGCgGCGCUCGACUCg- -3'
miRNA:   3'- aCUGCG---------------CGGCCGgCGCGGGCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 181653 0.68 0.413902
Target:  5'- uUGACaucuuCGCCguggucggauacaaGGCCGCGaccucggucuUCCGACCCCGg -3'
miRNA:   3'- -ACUGc----GCGG--------------CCGGCGC----------GGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 26946 0.68 0.416248
Target:  5'- gGAC-CGCuccggCGGCCGCGgCgGGCUCCGg -3'
miRNA:   3'- aCUGcGCG-----GCCGGCGCgGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 33385 0.68 0.423334
Target:  5'- -uGCGCGCgGaGCCucucgagGCGCUCG-CCCCGg -3'
miRNA:   3'- acUGCGCGgC-CGG-------CGCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 66373 0.68 0.424126
Target:  5'- cGGCGCGCugaucgucgagCGGCUGCGCUCG-CUgaCCGa -3'
miRNA:   3'- aCUGCGCG-----------GCCGGCGCGGGCuGG--GGC- -5'
16127 5' -67.3 NC_004065.1 + 112753 0.68 0.424126
Target:  5'- cUGAU-CGCCGGCUcguGCGCCUcuuGCCCCa -3'
miRNA:   3'- -ACUGcGCGGCCGG---CGCGGGc--UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 146815 0.68 0.424126
Target:  5'- gGAUGUGCCuGcCCGgGCCCGAauuUCCCu -3'
miRNA:   3'- aCUGCGCGGcC-GGCgCGGGCU---GGGGc -5'
16127 5' -67.3 NC_004065.1 + 22006 0.68 0.431293
Target:  5'- cGACGgucaucgcCGCCGGCacuaaccCG-GCCaCGGCCCCGg -3'
miRNA:   3'- aCUGC--------GCGGCCG-------GCgCGG-GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 85492 0.68 0.432093
Target:  5'- cGACcaugGUGCUGGCCaugucgcugGCGCUCGGCUUCGg -3'
miRNA:   3'- aCUG----CGCGGCCGG---------CGCGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 648 0.68 0.432093
Target:  5'- gUGAgUGCGuCCGGCCGCGCguagCGAgcaCCCGc -3'
miRNA:   3'- -ACU-GCGC-GGCCGGCGCGg---GCUg--GGGC- -5'
16127 5' -67.3 NC_004065.1 + 131766 0.68 0.432093
Target:  5'- -cGCGCGCCcagGGCCGcCGuCCCGAgCCg- -3'
miRNA:   3'- acUGCGCGG---CCGGC-GC-GGGCUgGGgc -5'
16127 5' -67.3 NC_004065.1 + 151368 0.68 0.432093
Target:  5'- ---gGCGCCGGCCGCuGCgCUGGCggCCGa -3'
miRNA:   3'- acugCGCGGCCGGCG-CG-GGCUGg-GGC- -5'
16127 5' -67.3 NC_004065.1 + 128578 0.68 0.439337
Target:  5'- aUGACGaggagaacgggucCGCCGGCgGCGaccucuucUCCGACCUCa -3'
miRNA:   3'- -ACUGC-------------GCGGCCGgCGC--------GGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 96967 0.68 0.440147
Target:  5'- cUGcCGCGCCuGCUGCGCC-GGCCguCCGu -3'
miRNA:   3'- -ACuGCGCGGcCGGCGCGGgCUGG--GGC- -5'
16127 5' -67.3 NC_004065.1 + 38118 0.68 0.440147
Target:  5'- --uCGUGCCGuacGUCGCGCCgGACUUCGg -3'
miRNA:   3'- acuGCGCGGC---CGGCGCGGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 220762 0.68 0.447468
Target:  5'- aUGACGCGUgCGGUUaaggaaaacccagGC-UCCGACCCCGa -3'
miRNA:   3'- -ACUGCGCG-GCCGG-------------CGcGGGCUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.