miRNA display CGI


Results 101 - 120 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 220762 0.68 0.447468
Target:  5'- aUGACGCGUgCGGUUaaggaaaacccagGC-UCCGACCCCGa -3'
miRNA:   3'- -ACUGCGCG-GCCGG-------------CGcGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 212366 0.68 0.448285
Target:  5'- cGAC-CGUCGGUCGUcaUCCGACUCCGg -3'
miRNA:   3'- aCUGcGCGGCCGGCGc-GGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 123674 0.67 0.456506
Target:  5'- gUGGCGCGCUGcccguGCagcaGCGCCgGGCCgCCc -3'
miRNA:   3'- -ACUGCGCGGC-----CGg---CGCGGgCUGG-GGc -5'
16127 5' -67.3 NC_004065.1 + 162164 0.67 0.456506
Target:  5'- cGGC-CGCCGGCUGCGgCgcagcgucuucgCCGugCCCu -3'
miRNA:   3'- aCUGcGCGGCCGGCGC-G------------GGCugGGGc -5'
16127 5' -67.3 NC_004065.1 + 26182 0.67 0.456506
Target:  5'- --cCGUGCCGG-CGCGUCCcuuucGACCUCGa -3'
miRNA:   3'- acuGCGCGGCCgGCGCGGG-----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 164475 0.67 0.456506
Target:  5'- cGACcCGCCGGCgaCGCGCCCaGCgUCa -3'
miRNA:   3'- aCUGcGCGGCCG--GCGCGGGcUGgGGc -5'
16127 5' -67.3 NC_004065.1 + 60072 0.67 0.456506
Target:  5'- -uGCGaCGCgGGCCGCGCUCGuCgUCGu -3'
miRNA:   3'- acUGC-GCGgCCGGCGCGGGCuGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 117393 0.67 0.456506
Target:  5'- cGACGC-UCGGCCGCGCgCGcuggGCUCgCGg -3'
miRNA:   3'- aCUGCGcGGCCGGCGCGgGC----UGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 116489 0.67 0.463141
Target:  5'- gGGCGagcugaGCCGGCCcagacagaagaGUCCGGCCUCGg -3'
miRNA:   3'- aCUGCg-----CGGCCGGcg---------CGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 149390 0.67 0.463974
Target:  5'- cGAC-CGCCGGCCauaucgaggaccgGUGCaaCCG-CCCCGa -3'
miRNA:   3'- aCUGcGCGGCCGG-------------CGCG--GGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 133438 0.67 0.464807
Target:  5'- gGGCGCGUCGGCCuCGUucugcgauuguuCCG-CCUCGg -3'
miRNA:   3'- aCUGCGCGGCCGGcGCG------------GGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 48754 0.67 0.464807
Target:  5'- aGAUGcCGCCGGUgGCGCCgaagagcaucaCGaACCUCGu -3'
miRNA:   3'- aCUGC-GCGGCCGgCGCGG-----------GC-UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 50334 0.67 0.464807
Target:  5'- gUGGCaCGCgUGGCCacCGCCgCGAUCCCGa -3'
miRNA:   3'- -ACUGcGCG-GCCGGc-GCGG-GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 173450 0.67 0.464807
Target:  5'- cGACGUaccGgUGGCgGCGCUCGACgCCa -3'
miRNA:   3'- aCUGCG---CgGCCGgCGCGGGCUGgGGc -5'
16127 5' -67.3 NC_004065.1 + 191844 0.67 0.472346
Target:  5'- cGugGUGaCGGCCGCGacuaucgCCGcgauggcGCCCCGa -3'
miRNA:   3'- aCugCGCgGCCGGCGCg------GGC-------UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 195764 0.67 0.472346
Target:  5'- cGACgGCGCCGuGUCGCGCugaccauggcggaCCGcggGCCCUGc -3'
miRNA:   3'- aCUG-CGCGGC-CGGCGCG-------------GGC---UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 43091 0.67 0.473187
Target:  5'- gGACG-GuCCGGgcauCCGCGaCCCGGCgCCGa -3'
miRNA:   3'- aCUGCgC-GGCC----GGCGC-GGGCUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 74875 0.67 0.473187
Target:  5'- aGACGgGCaGGUCGCaG-CCGACCUCGu -3'
miRNA:   3'- aCUGCgCGgCCGGCG-CgGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 42608 0.67 0.473187
Target:  5'- -aGCGCGCUgGGgUGCGCUCGcCCUCGa -3'
miRNA:   3'- acUGCGCGG-CCgGCGCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 26906 0.67 0.473187
Target:  5'- aGGC-CGCuCGaCCGCacGCCgGACCCCGa -3'
miRNA:   3'- aCUGcGCG-GCcGGCG--CGGgCUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.