miRNA display CGI


Results 121 - 140 of 212 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 129879 0.67 0.473187
Target:  5'- cGACcuGUGCCGcgcGCUGCGgCgGACCCUGa -3'
miRNA:   3'- aCUG--CGCGGC---CGGCGCgGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 42608 0.67 0.473187
Target:  5'- -aGCGCGCUgGGgUGCGCUCGcCCUCGa -3'
miRNA:   3'- acUGCGCGG-CCgGCGCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 89809 0.67 0.473187
Target:  5'- cGGCG-GCCGuCUGCGCCgCGACCUg- -3'
miRNA:   3'- aCUGCgCGGCcGGCGCGG-GCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 179132 0.67 0.473187
Target:  5'- gGugGCGgUGGaguaCCGUccucGCCCGugCCCGu -3'
miRNA:   3'- aCugCGCgGCC----GGCG----CGGGCugGGGC- -5'
16127 5' -67.3 NC_004065.1 + 26906 0.67 0.473187
Target:  5'- aGGC-CGCuCGaCCGCacGCCgGACCCCGa -3'
miRNA:   3'- aCUGcGCG-GCcGGCG--CGGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 142407 0.67 0.47656
Target:  5'- --uCGCGCgGGCCaucuuucgccugccgGCGCgCCGGCUCCu -3'
miRNA:   3'- acuGCGCGgCCGG---------------CGCG-GGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 79104 0.67 0.481642
Target:  5'- cGACaaccCGCCGgaGCCGcCGUCgGACCCCu -3'
miRNA:   3'- aCUGc---GCGGC--CGGC-GCGGgCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 111600 0.67 0.481642
Target:  5'- gGACGcCGCCGuguucGCCgGCGagaUCGAUCCCGa -3'
miRNA:   3'- aCUGC-GCGGC-----CGG-CGCg--GGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 163393 0.67 0.481642
Target:  5'- -aGCGCGuCCGccacgcagcGCCGCaGCCCGcgGCUCCGg -3'
miRNA:   3'- acUGCGC-GGC---------CGGCG-CGGGC--UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 66728 0.67 0.481642
Target:  5'- cUGGCGC-CCGuGCCGU--CgGACCCCGg -3'
miRNA:   3'- -ACUGCGcGGC-CGGCGcgGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 198124 0.67 0.481642
Target:  5'- cGACGCGCCGcGUCaG-GCCCGcUCUCGa -3'
miRNA:   3'- aCUGCGCGGC-CGG-CgCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 75331 0.67 0.481642
Target:  5'- aGACGCGgCGuccGUCGCGUUCGuCCUCGa -3'
miRNA:   3'- aCUGCGCgGC---CGGCGCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 197147 0.67 0.485044
Target:  5'- aGACGCucGCCGG-CGCGCCucuCGAccagggacgccagcuCCCCGc -3'
miRNA:   3'- aCUGCG--CGGCCgGCGCGG---GCU---------------GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 99908 0.67 0.487603
Target:  5'- uUGAUGCuGCCGGCgucuucuucguccaUGaCGCCgGACCgCCGc -3'
miRNA:   3'- -ACUGCG-CGGCCG--------------GC-GCGGgCUGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 123877 0.67 0.489313
Target:  5'- cGcACGCGCCGcaggugcGCCGUGCacguCGucGCCCCGu -3'
miRNA:   3'- aC-UGCGCGGC-------CGGCGCGg---GC--UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 69416 0.67 0.490169
Target:  5'- cGGgGCGCCaGgUGCGCgCCGACCUg- -3'
miRNA:   3'- aCUgCGCGGcCgGCGCG-GGCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 45101 0.67 0.490169
Target:  5'- aGAC-CGucucCCGGCCGCuCCCGAgccaCCCGg -3'
miRNA:   3'- aCUGcGC----GGCCGGCGcGGGCUg---GGGC- -5'
16127 5' -67.3 NC_004065.1 + 196375 0.67 0.490169
Target:  5'- -cGCGCGCCGGacggucgaagCGCGCCCcgaacgcgauGGCCuuGg -3'
miRNA:   3'- acUGCGCGGCCg---------GCGCGGG----------CUGGggC- -5'
16127 5' -67.3 NC_004065.1 + 138821 0.67 0.490169
Target:  5'- cGGCgGCGCCGauGCCGCGCacgCCGACggcgcuUCCGc -3'
miRNA:   3'- aCUG-CGCGGC--CGGCGCG---GGCUG------GGGC- -5'
16127 5' -67.3 NC_004065.1 + 114976 0.67 0.490169
Target:  5'- -cGCGCGCC-GuuGCcCUCGGCCCUGg -3'
miRNA:   3'- acUGCGCGGcCggCGcGGGCUGGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.