miRNA display CGI


Results 21 - 40 of 212 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 166143 0.66 0.54268
Target:  5'- aGACgucgGCGCCGGCgGCagcgGCgCCGACgUCGu -3'
miRNA:   3'- aCUG----CGCGGCCGgCG----CG-GGCUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 61850 0.66 0.54268
Target:  5'- cGuCGCGCCGcuGUCGCGCCCcgcgcgaagGGCCUg- -3'
miRNA:   3'- aCuGCGCGGC--CGGCGCGGG---------CUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 104608 0.66 0.54268
Target:  5'- aGGCgcugGCGCCGGCCGacuuCCaCGACCUgCGg -3'
miRNA:   3'- aCUG----CGCGGCCGGCgc--GG-GCUGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 170447 0.66 0.54268
Target:  5'- gGACGcCGCCGGagGCGCCUucgcuGCCgCCGc -3'
miRNA:   3'- aCUGC-GCGGCCggCGCGGGc----UGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 117166 0.66 0.54268
Target:  5'- cGACaGCGCCGaCgGgGUCCGcCCCUGg -3'
miRNA:   3'- aCUG-CGCGGCcGgCgCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 25216 0.66 0.54268
Target:  5'- gGugGCGCCGauGCCGacgaaGCCCGGgaUCGa -3'
miRNA:   3'- aCugCGCGGC--CGGCg----CGGGCUggGGC- -5'
16127 5' -67.3 NC_004065.1 + 130154 0.66 0.54268
Target:  5'- gGACGa---GGCCGuCGCUauccgCGACCCCGg -3'
miRNA:   3'- aCUGCgcggCCGGC-GCGG-----GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 114227 0.66 0.54268
Target:  5'- cUGACa--CCGGCCGCaGUuuCCGugCCCGg -3'
miRNA:   3'- -ACUGcgcGGCCGGCG-CG--GGCugGGGC- -5'
16127 5' -67.3 NC_004065.1 + 130632 0.66 0.54268
Target:  5'- -aACGCGCCcGCCGCcaggcaGCCC-ACgCCCGu -3'
miRNA:   3'- acUGCGCGGcCGGCG------CGGGcUG-GGGC- -5'
16127 5' -67.3 NC_004065.1 + 128007 0.66 0.54268
Target:  5'- cGAgGUgGCCcGCCGCGCCaacuaCGACCUCu -3'
miRNA:   3'- aCUgCG-CGGcCGGCGCGG-----GCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 182709 0.66 0.541788
Target:  5'- cGACGguaccgaCGCUGGUCGCGCCUcuuauACCCaCGu -3'
miRNA:   3'- aCUGC-------GCGGCCGGCGCGGGc----UGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 94372 0.66 0.540006
Target:  5'- cGACGCGCguuaCGGCCGCGgCgagcugucggcuggUGGCgCCGu -3'
miRNA:   3'- aCUGCGCG----GCCGGCGCgG--------------GCUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 92206 0.66 0.533785
Target:  5'- aGACGCG--GGCCGCgaacagGCCCacauCCCCGa -3'
miRNA:   3'- aCUGCGCggCCGGCG------CGGGcu--GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 103459 0.66 0.533785
Target:  5'- -cGCGUGCU-GCUGCGCCaCGcGCCCCc -3'
miRNA:   3'- acUGCGCGGcCGGCGCGG-GC-UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 200053 0.66 0.533785
Target:  5'- cUGcCGcCGCCGccGCCGCcaGCaCCGGuCCCCGa -3'
miRNA:   3'- -ACuGC-GCGGC--CGGCG--CG-GGCU-GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 110699 0.66 0.533785
Target:  5'- gUGACGUgaGCCGccGCCGCGaCUCGGCCg-- -3'
miRNA:   3'- -ACUGCG--CGGC--CGGCGC-GGGCUGGggc -5'
16127 5' -67.3 NC_004065.1 + 80855 0.66 0.533785
Target:  5'- gGACgaGCGCCaGGCCagGUcUCCGGCCCCc -3'
miRNA:   3'- aCUG--CGCGG-CCGG--CGcGGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 120628 0.66 0.533785
Target:  5'- cGugGCGUCcGCCGCGgCCGACg--- -3'
miRNA:   3'- aCugCGCGGcCGGCGCgGGCUGgggc -5'
16127 5' -67.3 NC_004065.1 + 51525 0.66 0.533785
Target:  5'- aUGACGaCGCC-GUCGCGUCCGAUgaugaagaugaCCUGu -3'
miRNA:   3'- -ACUGC-GCGGcCGGCGCGGGCUG-----------GGGC- -5'
16127 5' -67.3 NC_004065.1 + 109435 0.66 0.533785
Target:  5'- aGcCGCGCUGGCgGCGCgUGuaucGCCUCa -3'
miRNA:   3'- aCuGCGCGGCCGgCGCGgGC----UGGGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.