miRNA display CGI


Results 41 - 60 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 51525 0.66 0.533785
Target:  5'- aUGACGaCGCC-GUCGCGUCCGAUgaugaagaugaCCUGu -3'
miRNA:   3'- -ACUGC-GCGGcCGGCGCGGGCUG-----------GGGC- -5'
16127 5' -67.3 NC_004065.1 + 103459 0.66 0.533785
Target:  5'- -cGCGUGCU-GCUGCGCCaCGcGCCCCc -3'
miRNA:   3'- acUGCGCGGcCGGCGCGG-GC-UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 34950 0.66 0.524942
Target:  5'- --cUGCGCCGcGCgCuCGCCCGACCUg- -3'
miRNA:   3'- acuGCGCGGC-CG-GcGCGGGCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 202739 0.66 0.524942
Target:  5'- aGACGCGUcguCGGCgGCGCCgccggucucuuCGuCCUCGu -3'
miRNA:   3'- aCUGCGCG---GCCGgCGCGG-----------GCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 29007 0.66 0.524942
Target:  5'- cGAgGCGCCG--CGCGCaCgCGGCCUCGa -3'
miRNA:   3'- aCUgCGCGGCcgGCGCG-G-GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 113436 0.66 0.524942
Target:  5'- aGA-GCGgCGGCCGggggGCCCGccguGCCCCu -3'
miRNA:   3'- aCUgCGCgGCCGGCg---CGGGC----UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 61468 0.66 0.524942
Target:  5'- gUGAUGCGCUGcGCCaugGCGUCC-ACCaCCa -3'
miRNA:   3'- -ACUGCGCGGC-CGG---CGCGGGcUGG-GGc -5'
16127 5' -67.3 NC_004065.1 + 25554 0.66 0.524942
Target:  5'- cGGCgucgGCGUCGGCCccGCGCCUGAUCaUCa -3'
miRNA:   3'- aCUG----CGCGGCCGG--CGCGGGCUGG-GGc -5'
16127 5' -67.3 NC_004065.1 + 82782 0.66 0.516156
Target:  5'- aGGCGU-CCGGUgGCG-CCGACCCa- -3'
miRNA:   3'- aCUGCGcGGCCGgCGCgGGCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 107802 0.66 0.516156
Target:  5'- cGACcCGCCGGCC-CGCUCGAggaCCa -3'
miRNA:   3'- aCUGcGCGGCCGGcGCGGGCUgg-GGc -5'
16127 5' -67.3 NC_004065.1 + 169253 0.66 0.516156
Target:  5'- cGAgGCGggaGGCCGCgGCCCugugcGGCCUCGa -3'
miRNA:   3'- aCUgCGCgg-CCGGCG-CGGG-----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 109391 0.66 0.516156
Target:  5'- aGACaagccCGUCGGCCGCGgCgGACgCCa -3'
miRNA:   3'- aCUGc----GCGGCCGGCGCgGgCUGgGGc -5'
16127 5' -67.3 NC_004065.1 + 176786 0.66 0.516156
Target:  5'- cGAuCGCGCCGGCggagCGCGUUgGACCa-- -3'
miRNA:   3'- aCU-GCGCGGCCG----GCGCGGgCUGGggc -5'
16127 5' -67.3 NC_004065.1 + 132017 0.66 0.516156
Target:  5'- -cACGCGCCGGCgGUGgU-GACCCaCGa -3'
miRNA:   3'- acUGCGCGGCCGgCGCgGgCUGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 99224 0.66 0.516156
Target:  5'- ---aGCGCCGGCCagGCGaUCCG-CCUCGc -3'
miRNA:   3'- acugCGCGGCCGG--CGC-GGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 39658 0.66 0.515281
Target:  5'- gGACGCGCCuugGGUCGUgaaagGCCCGucgucgaAUCCCu -3'
miRNA:   3'- aCUGCGCGG---CCGGCG-----CGGGC-------UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 28849 0.67 0.510912
Target:  5'- gGACGCGCCGcuuggugucggcgcuGCUGCGUgaCGaggacugcuggcGCCCCGa -3'
miRNA:   3'- aCUGCGCGGC---------------CGGCGCGg-GC------------UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 113702 0.67 0.507429
Target:  5'- cGACGCcgucGCCGcuGCCGC-CgCCGACgCCGa -3'
miRNA:   3'- aCUGCG----CGGC--CGGCGcG-GGCUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 130359 0.67 0.507429
Target:  5'- gGACGCuGUCGgcGCCGCGCcgCCGGCUUCu -3'
miRNA:   3'- aCUGCG-CGGC--CGGCGCG--GGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 35933 0.67 0.507429
Target:  5'- cGACGCcucCCuGUCGUGCuCCGACCgCGa -3'
miRNA:   3'- aCUGCGc--GGcCGGCGCG-GGCUGGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.