miRNA display CGI


Results 81 - 100 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 75331 0.67 0.481642
Target:  5'- aGACGCGgCGuccGUCGCGUUCGuCCUCGa -3'
miRNA:   3'- aCUGCGCgGC---CGGCGCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 111600 0.67 0.481642
Target:  5'- gGACGcCGCCGuguucGCCgGCGagaUCGAUCCCGa -3'
miRNA:   3'- aCUGC-GCGGC-----CGG-CGCg--GGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 163393 0.67 0.481642
Target:  5'- -aGCGCGuCCGccacgcagcGCCGCaGCCCGcgGCUCCGg -3'
miRNA:   3'- acUGCGC-GGC---------CGGCG-CGGGC--UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 79104 0.67 0.481642
Target:  5'- cGACaaccCGCCGgaGCCGcCGUCgGACCCCu -3'
miRNA:   3'- aCUGc---GCGGC--CGGC-GCGGgCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 198124 0.67 0.481642
Target:  5'- cGACGCGCCGcGUCaG-GCCCGcUCUCGa -3'
miRNA:   3'- aCUGCGCGGC-CGG-CgCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 66728 0.67 0.481642
Target:  5'- cUGGCGC-CCGuGCCGU--CgGACCCCGg -3'
miRNA:   3'- -ACUGCGcGGC-CGGCGcgGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 142407 0.67 0.47656
Target:  5'- --uCGCGCgGGCCaucuuucgccugccgGCGCgCCGGCUCCu -3'
miRNA:   3'- acuGCGCGgCCGG---------------CGCG-GGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 109451 0.67 0.473187
Target:  5'- aGACcgGCGCCGGaggucccgcCCGCucGCgCCGACCgCCGc -3'
miRNA:   3'- aCUG--CGCGGCC---------GGCG--CG-GGCUGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 179132 0.67 0.473187
Target:  5'- gGugGCGgUGGaguaCCGUccucGCCCGugCCCGu -3'
miRNA:   3'- aCugCGCgGCC----GGCG----CGGGCugGGGC- -5'
16127 5' -67.3 NC_004065.1 + 89809 0.67 0.473187
Target:  5'- cGGCG-GCCGuCUGCGCCgCGACCUg- -3'
miRNA:   3'- aCUGCgCGGCcGGCGCGG-GCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 43091 0.67 0.473187
Target:  5'- gGACG-GuCCGGgcauCCGCGaCCCGGCgCCGa -3'
miRNA:   3'- aCUGCgC-GGCC----GGCGC-GGGCUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 42608 0.67 0.473187
Target:  5'- -aGCGCGCUgGGgUGCGCUCGcCCUCGa -3'
miRNA:   3'- acUGCGCGG-CCgGCGCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 26906 0.67 0.473187
Target:  5'- aGGC-CGCuCGaCCGCacGCCgGACCCCGa -3'
miRNA:   3'- aCUGcGCG-GCcGGCG--CGGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 119022 0.67 0.473187
Target:  5'- gGACGCGUgguacaUGGCCGUGCUCGucaacacgacGCUCUGa -3'
miRNA:   3'- aCUGCGCG------GCCGGCGCGGGC----------UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 74875 0.67 0.473187
Target:  5'- aGACGgGCaGGUCGCaG-CCGACCUCGu -3'
miRNA:   3'- aCUGCgCGgCCGGCG-CgGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 129879 0.67 0.473187
Target:  5'- cGACcuGUGCCGcgcGCUGCGgCgGACCCUGa -3'
miRNA:   3'- aCUG--CGCGGC---CGGCGCgGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 191844 0.67 0.472346
Target:  5'- cGugGUGaCGGCCGCGacuaucgCCGcgauggcGCCCCGa -3'
miRNA:   3'- aCugCGCgGCCGGCGCg------GGC-------UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 195764 0.67 0.472346
Target:  5'- cGACgGCGCCGuGUCGCGCugaccauggcggaCCGcggGCCCUGc -3'
miRNA:   3'- aCUG-CGCGGC-CGGCGCG-------------GGC---UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 173450 0.67 0.464807
Target:  5'- cGACGUaccGgUGGCgGCGCUCGACgCCa -3'
miRNA:   3'- aCUGCG---CgGCCGgCGCGGGCUGgGGc -5'
16127 5' -67.3 NC_004065.1 + 48754 0.67 0.464807
Target:  5'- aGAUGcCGCCGGUgGCGCCgaagagcaucaCGaACCUCGu -3'
miRNA:   3'- aCUGC-GCGGCCGgCGCGG-----------GC-UGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.