miRNA display CGI


Results 101 - 120 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 50334 0.67 0.464807
Target:  5'- gUGGCaCGCgUGGCCacCGCCgCGAUCCCGa -3'
miRNA:   3'- -ACUGcGCG-GCCGGc-GCGG-GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 48754 0.67 0.464807
Target:  5'- aGAUGcCGCCGGUgGCGCCgaagagcaucaCGaACCUCGu -3'
miRNA:   3'- aCUGC-GCGGCCGgCGCGG-----------GC-UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 149390 0.67 0.463974
Target:  5'- cGAC-CGCCGGCCauaucgaggaccgGUGCaaCCG-CCCCGa -3'
miRNA:   3'- aCUGcGCGGCCGG-------------CGCG--GGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 116489 0.67 0.463141
Target:  5'- gGGCGagcugaGCCGGCCcagacagaagaGUCCGGCCUCGg -3'
miRNA:   3'- aCUGCg-----CGGCCGGcg---------CGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 60072 0.67 0.456506
Target:  5'- -uGCGaCGCgGGCCGCGCUCGuCgUCGu -3'
miRNA:   3'- acUGC-GCGgCCGGCGCGGGCuGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 123674 0.67 0.456506
Target:  5'- gUGGCGCGCUGcccguGCagcaGCGCCgGGCCgCCc -3'
miRNA:   3'- -ACUGCGCGGC-----CGg---CGCGGgCUGG-GGc -5'
16127 5' -67.3 NC_004065.1 + 162164 0.67 0.456506
Target:  5'- cGGC-CGCCGGCUGCGgCgcagcgucuucgCCGugCCCu -3'
miRNA:   3'- aCUGcGCGGCCGGCGC-G------------GGCugGGGc -5'
16127 5' -67.3 NC_004065.1 + 164475 0.67 0.456506
Target:  5'- cGACcCGCCGGCgaCGCGCCCaGCgUCa -3'
miRNA:   3'- aCUGcGCGGCCG--GCGCGGGcUGgGGc -5'
16127 5' -67.3 NC_004065.1 + 26182 0.67 0.456506
Target:  5'- --cCGUGCCGG-CGCGUCCcuuucGACCUCGa -3'
miRNA:   3'- acuGCGCGGCCgGCGCGGG-----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 117393 0.67 0.456506
Target:  5'- cGACGC-UCGGCCGCGCgCGcuggGCUCgCGg -3'
miRNA:   3'- aCUGCGcGGCCGGCGCGgGC----UGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 212366 0.68 0.448285
Target:  5'- cGAC-CGUCGGUCGUcaUCCGACUCCGg -3'
miRNA:   3'- aCUGcGCGGCCGGCGc-GGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 220762 0.68 0.447468
Target:  5'- aUGACGCGUgCGGUUaaggaaaacccagGC-UCCGACCCCGa -3'
miRNA:   3'- -ACUGCGCG-GCCGG-------------CGcGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 88939 0.68 0.447468
Target:  5'- aGGCGCGgCGGuaGCuggccagGCCCGcguagugccaGCCCCGg -3'
miRNA:   3'- aCUGCGCgGCCggCG-------CGGGC----------UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 38118 0.68 0.440147
Target:  5'- --uCGUGCCGuacGUCGCGCCgGACUUCGg -3'
miRNA:   3'- acuGCGCGGC---CGGCGCGGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 96967 0.68 0.440147
Target:  5'- cUGcCGCGCCuGCUGCGCC-GGCCguCCGu -3'
miRNA:   3'- -ACuGCGCGGcCGGCGCGGgCUGG--GGC- -5'
16127 5' -67.3 NC_004065.1 + 128578 0.68 0.439337
Target:  5'- aUGACGaggagaacgggucCGCCGGCgGCGaccucuucUCCGACCUCa -3'
miRNA:   3'- -ACUGC-------------GCGGCCGgCGC--------GGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 151368 0.68 0.432093
Target:  5'- ---gGCGCCGGCCGCuGCgCUGGCggCCGa -3'
miRNA:   3'- acugCGCGGCCGGCG-CG-GGCUGg-GGC- -5'
16127 5' -67.3 NC_004065.1 + 648 0.68 0.432093
Target:  5'- gUGAgUGCGuCCGGCCGCGCguagCGAgcaCCCGc -3'
miRNA:   3'- -ACU-GCGC-GGCCGGCGCGg---GCUg--GGGC- -5'
16127 5' -67.3 NC_004065.1 + 131766 0.68 0.432093
Target:  5'- -cGCGCGCCcagGGCCGcCGuCCCGAgCCg- -3'
miRNA:   3'- acUGCGCGG---CCGGC-GC-GGGCUgGGgc -5'
16127 5' -67.3 NC_004065.1 + 85492 0.68 0.432093
Target:  5'- cGACcaugGUGCUGGCCaugucgcugGCGCUCGGCUUCGg -3'
miRNA:   3'- aCUG----CGCGGCCGG---------CGCGGGCUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.