miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 549 0.71 0.303175
Target:  5'- --cCGCGaCGaGCgGCGCCCGGCCCgGa -3'
miRNA:   3'- acuGCGCgGC-CGgCGCGGGCUGGGgC- -5'
16127 5' -67.3 NC_004065.1 + 648 0.68 0.432093
Target:  5'- gUGAgUGCGuCCGGCCGCGCguagCGAgcaCCCGc -3'
miRNA:   3'- -ACU-GCGC-GGCCGGCGCGg---GCUg--GGGC- -5'
16127 5' -67.3 NC_004065.1 + 760 0.66 0.54268
Target:  5'- -cGCGuCGCgGGuUCGCGCUCGACCUuCGa -3'
miRNA:   3'- acUGC-GCGgCC-GGCGCGGGCUGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 22006 0.68 0.431293
Target:  5'- cGACGgucaucgcCGCCGGCacuaaccCG-GCCaCGGCCCCGg -3'
miRNA:   3'- aCUGC--------GCGGCCG-------GCgCGG-GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 22369 0.69 0.38565
Target:  5'- cGACGacagagagggaGCCGGCCGCGUgCGGcauggagcuguCCCUGg -3'
miRNA:   3'- aCUGCg----------CGGCCGGCGCGgGCU-----------GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 24483 0.72 0.252869
Target:  5'- gGGCGCguagauggcaccgccGCCGGCCcugaGCG-CCGGCCCCa -3'
miRNA:   3'- aCUGCG---------------CGGCCGG----CGCgGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 25017 0.75 0.164502
Target:  5'- gGGCGCGgCaaggGGCCGUGuCCCGACCCUc -3'
miRNA:   3'- aCUGCGCgG----CCGGCGC-GGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 25216 0.66 0.54268
Target:  5'- gGugGCGCCGauGCCGacgaaGCCCGGgaUCGa -3'
miRNA:   3'- aCugCGCGGC--CGGCg----CGGGCUggGGC- -5'
16127 5' -67.3 NC_004065.1 + 25554 0.66 0.524942
Target:  5'- cGGCgucgGCGUCGGCCccGCGCCUGAUCaUCa -3'
miRNA:   3'- aCUG----CGCGGCCGG--CGCGGGCUGG-GGc -5'
16127 5' -67.3 NC_004065.1 + 26182 0.67 0.456506
Target:  5'- --cCGUGCCGG-CGCGUCCcuuucGACCUCGa -3'
miRNA:   3'- acuGCGCGGCCgGCGCGGG-----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 26906 0.67 0.473187
Target:  5'- aGGC-CGCuCGaCCGCacGCCgGACCCCGa -3'
miRNA:   3'- aCUGcGCG-GCcGGCG--CGGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 26946 0.68 0.416248
Target:  5'- gGAC-CGCuccggCGGCCGCGgCgGGCUCCGg -3'
miRNA:   3'- aCUGcGCG-----GCCGGCGCgGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 28480 0.69 0.393159
Target:  5'- uUGugGCGuCUGGCCgacaGCGCCgCGgaGCUCCGu -3'
miRNA:   3'- -ACugCGC-GGCCGG----CGCGG-GC--UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 28849 0.67 0.510912
Target:  5'- gGACGCGCCGcuuggugucggcgcuGCUGCGUgaCGaggacugcuggcGCCCCGa -3'
miRNA:   3'- aCUGCGCGGC---------------CGGCGCGg-GC------------UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 29007 0.66 0.524942
Target:  5'- cGAgGCGCCG--CGCGCaCgCGGCCUCGa -3'
miRNA:   3'- aCUgCGCGGCcgGCGCG-G-GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 29229 0.69 0.38565
Target:  5'- --cCGCGCCGagacGCCGuCGCCCG-CCaCCGc -3'
miRNA:   3'- acuGCGCGGC----CGGC-GCGGGCuGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 30485 0.78 0.105882
Target:  5'- gGGCGCGcCCGGCUggagGCGCCCGGCUgCGc -3'
miRNA:   3'- aCUGCGC-GGCCGG----CGCGGGCUGGgGC- -5'
16127 5' -67.3 NC_004065.1 + 30984 0.7 0.3095
Target:  5'- gGAUGCGCUcGCCGCGUCgGGCgCUGa -3'
miRNA:   3'- aCUGCGCGGcCGGCGCGGgCUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 32884 0.73 0.205954
Target:  5'- aGGCGCGCCGGCgaGCGUCUG-CCgCUGg -3'
miRNA:   3'- aCUGCGCGGCCGg-CGCGGGCuGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 33385 0.68 0.423334
Target:  5'- -uGCGCGCgGaGCCucucgagGCGCUCG-CCCCGg -3'
miRNA:   3'- acUGCGCGgC-CGG-------CGCGGGCuGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.