miRNA display CGI


Results 21 - 40 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 34950 0.66 0.524942
Target:  5'- --cUGCGCCGcGCgCuCGCCCGACCUg- -3'
miRNA:   3'- acuGCGCGGC-CG-GcGCGGGCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 35127 0.67 0.498766
Target:  5'- cGGCgGCGCCGuggucucgauGCCGaaGCCCaaGACCCUGg -3'
miRNA:   3'- aCUG-CGCGGC----------CGGCg-CGGG--CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 35467 0.68 0.411564
Target:  5'- cGACGCGCUGcGCgGUGCCCGugacgacguucacggGCacgaCCGg -3'
miRNA:   3'- aCUGCGCGGC-CGgCGCGGGC---------------UGg---GGC- -5'
16127 5' -67.3 NC_004065.1 + 35559 0.7 0.335802
Target:  5'- aGGCGUGagCGGCgGCGCCgcCGugCCCa -3'
miRNA:   3'- aCUGCGCg-GCCGgCGCGG--GCugGGGc -5'
16127 5' -67.3 NC_004065.1 + 35933 0.67 0.507429
Target:  5'- cGACGCcucCCuGUCGUGCuCCGACCgCGa -3'
miRNA:   3'- aCUGCGc--GGcCGGCGCG-GGCUGGgGC- -5'
16127 5' -67.3 NC_004065.1 + 38118 0.68 0.440147
Target:  5'- --uCGUGCCGuacGUCGCGCCgGACUUCGg -3'
miRNA:   3'- acuGCGCGGC---CGGCGCGGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 39658 0.66 0.515281
Target:  5'- gGACGCGCCuugGGUCGUgaaagGCCCGucgucgaAUCCCu -3'
miRNA:   3'- aCUGCGCGG---CCGGCG-----CGGGC-------UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 40820 0.71 0.278871
Target:  5'- gGACGCGuUCGGCCGCGuCCCuGACgUUGu -3'
miRNA:   3'- aCUGCGC-GGCCGGCGC-GGG-CUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 40902 0.71 0.29695
Target:  5'- cGcACGCGCCGGCU-UGUCgGGCCCUGa -3'
miRNA:   3'- aC-UGCGCGGCCGGcGCGGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 42057 0.69 0.378236
Target:  5'- cGGCGUGCUGGCgcuggUGUGgCUGACCUCGc -3'
miRNA:   3'- aCUGCGCGGCCG-----GCGCgGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 42608 0.67 0.473187
Target:  5'- -aGCGCGCUgGGgUGCGCUCGcCCUCGa -3'
miRNA:   3'- acUGCGCGG-CCgGCGCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 43091 0.67 0.473187
Target:  5'- gGACG-GuCCGGgcauCCGCGaCCCGGCgCCGa -3'
miRNA:   3'- aCUGCgC-GGCC----GGCGC-GGGCUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 45101 0.67 0.490169
Target:  5'- aGAC-CGucucCCGGCCGCuCCCGAgccaCCCGg -3'
miRNA:   3'- aCUGcGC----GGCCGGCGcGGGCUg---GGGC- -5'
16127 5' -67.3 NC_004065.1 + 45857 0.68 0.400763
Target:  5'- gGACGCGauGGCCGCuCCgacggaggaaGACCCCa -3'
miRNA:   3'- aCUGCGCggCCGGCGcGGg---------CUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 47289 0.71 0.290824
Target:  5'- cGACGUGUCGGUgGC-CCCGGCgucgCCCGu -3'
miRNA:   3'- aCUGCGCGGCCGgCGcGGGCUG----GGGC- -5'
16127 5' -67.3 NC_004065.1 + 48754 0.67 0.464807
Target:  5'- aGAUGcCGCCGGUgGCGCCgaagagcaucaCGaACCUCGu -3'
miRNA:   3'- aCUGC-GCGGCCGgCGCGG-----------GC-UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 50334 0.67 0.464807
Target:  5'- gUGGCaCGCgUGGCCacCGCCgCGAUCCCGa -3'
miRNA:   3'- -ACUGcGCG-GCCGGc-GCGG-GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 51525 0.66 0.533785
Target:  5'- aUGACGaCGCC-GUCGCGUCCGAUgaugaagaugaCCUGu -3'
miRNA:   3'- -ACUGC-GCGGcCGGCGCGGGCUG-----------GGGC- -5'
16127 5' -67.3 NC_004065.1 + 53402 0.67 0.498766
Target:  5'- gGAgGCGCCGG--GCGCCCGcuaucauCCUCGu -3'
miRNA:   3'- aCUgCGCGGCCggCGCGGGCu------GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 60072 0.67 0.456506
Target:  5'- -uGCGaCGCgGGCCGCGCUCGuCgUCGu -3'
miRNA:   3'- acUGC-GCGgCCGGCGCGGGCuGgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.