miRNA display CGI


Results 41 - 60 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 60114 0.66 0.560611
Target:  5'- aGAaGCgGCCGGCCGCGUacaGGCUCUu -3'
miRNA:   3'- aCUgCG-CGGCCGGCGCGgg-CUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 61390 0.68 0.400763
Target:  5'- cGcCGCGCCGGCUcCGCCCGcgGCaCCa -3'
miRNA:   3'- aCuGCGCGGCCGGcGCGGGC--UGgGGc -5'
16127 5' -67.3 NC_004065.1 + 61468 0.66 0.524942
Target:  5'- gUGAUGCGCUGcGCCaugGCGUCC-ACCaCCa -3'
miRNA:   3'- -ACUGCGCGGC-CGG---CGCGGGcUGG-GGc -5'
16127 5' -67.3 NC_004065.1 + 61850 0.66 0.54268
Target:  5'- cGuCGCGCCGcuGUCGCGCCCcgcgcgaagGGCCUg- -3'
miRNA:   3'- aCuGCGCGGC--CGGCGCGGG---------CUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 63848 0.66 0.551624
Target:  5'- cUGACGUucGCCauGGCCGCGUUCGGaaggaccaccaCCCGc -3'
miRNA:   3'- -ACUGCG--CGG--CCGGCGCGGGCUg----------GGGC- -5'
16127 5' -67.3 NC_004065.1 + 65223 0.67 0.507429
Target:  5'- aGA-GUGCCGGCggugGCGCCCG-UCUCGa -3'
miRNA:   3'- aCUgCGCGGCCGg---CGCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 65380 0.71 0.290824
Target:  5'- cGACGCGC--GCCGCGaCCCGACUguuccuCCGa -3'
miRNA:   3'- aCUGCGCGgcCGGCGC-GGGCUGG------GGC- -5'
16127 5' -67.3 NC_004065.1 + 66134 0.76 0.140107
Target:  5'- cUGGCGCGCUGGgCCGCGgaCCGGCgCCa -3'
miRNA:   3'- -ACUGCGCGGCC-GGCGCg-GGCUGgGGc -5'
16127 5' -67.3 NC_004065.1 + 66373 0.68 0.424126
Target:  5'- cGGCGCGCugaucgucgagCGGCUGCGCUCG-CUgaCCGa -3'
miRNA:   3'- aCUGCGCG-----------GCCGGCGCGGGCuGG--GGC- -5'
16127 5' -67.3 NC_004065.1 + 66728 0.67 0.481642
Target:  5'- cUGGCGC-CCGuGCCGU--CgGACCCCGg -3'
miRNA:   3'- -ACUGCGcGGC-CGGCGcgGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 67389 0.66 0.533785
Target:  5'- aGGCuggGCGCCgaGGCCaguaauGUGCCUGucuCCCCGg -3'
miRNA:   3'- aCUG---CGCGG--CCGG------CGCGGGCu--GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 67542 0.73 0.224926
Target:  5'- gUGGCGCuccucguccugGCCGGCCGCGCgaGGCCuucgCCGa -3'
miRNA:   3'- -ACUGCG-----------CGGCCGGCGCGggCUGG----GGC- -5'
16127 5' -67.3 NC_004065.1 + 68162 0.72 0.240112
Target:  5'- gUGAuCGCGgCGGCgCGCGCgacggagcugUCGGCCCCGc -3'
miRNA:   3'- -ACU-GCGCgGCCG-GCGCG----------GGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 69416 0.67 0.490169
Target:  5'- cGGgGCGCCaGgUGCGCgCCGACCUg- -3'
miRNA:   3'- aCUgCGCGGcCgGCGCG-GGCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 69469 0.69 0.393159
Target:  5'- aUGuCGCGCCGGCUGCGguaCgCGGCCaaCCa -3'
miRNA:   3'- -ACuGCGCGGCCGGCGCg--G-GCUGG--GGc -5'
16127 5' -67.3 NC_004065.1 + 71497 0.76 0.13377
Target:  5'- aGAUGCGCCGGUCGCGCUCGcaguCUgCGa -3'
miRNA:   3'- aCUGCGCGGCCGGCGCGGGCu---GGgGC- -5'
16127 5' -67.3 NC_004065.1 + 71957 0.68 0.400763
Target:  5'- cGACGcCGCCGGUgGaGCCgGGCagCCCGg -3'
miRNA:   3'- aCUGC-GCGGCCGgCgCGGgCUG--GGGC- -5'
16127 5' -67.3 NC_004065.1 + 72922 0.67 0.507429
Target:  5'- aGuCGCGCCu-CCGCGgCCGGCCaaCCGa -3'
miRNA:   3'- aCuGCGCGGccGGCGCgGGCUGG--GGC- -5'
16127 5' -67.3 NC_004065.1 + 74875 0.67 0.473187
Target:  5'- aGACGgGCaGGUCGCaG-CCGACCUCGu -3'
miRNA:   3'- aCUGCgCGgCCGGCG-CgGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 75331 0.67 0.481642
Target:  5'- aGACGCGgCGuccGUCGCGUUCGuCCUCGa -3'
miRNA:   3'- aCUGCGCgGC---CGGCGCGGGCuGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.