miRNA display CGI


Results 61 - 80 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 76414 0.66 0.54268
Target:  5'- aGugGCGCCGcCCGaG-CCGACCCg- -3'
miRNA:   3'- aCugCGCGGCcGGCgCgGGCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 77962 0.7 0.328409
Target:  5'- gUGACGUcgagccccgagacGCUGGCCGCGgcgagCCG-CCCCGg -3'
miRNA:   3'- -ACUGCG-------------CGGCCGGCGCg----GGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 78479 0.72 0.26168
Target:  5'- --cCGCGCCGcGUcaagCGCGCCCGACaccgCCCGg -3'
miRNA:   3'- acuGCGCGGC-CG----GCGCGGGCUG----GGGC- -5'
16127 5' -67.3 NC_004065.1 + 78657 0.7 0.329076
Target:  5'- cGGCcgccaGCGCagCGGCCgGCGCCgCGGCgCCCGa -3'
miRNA:   3'- aCUG-----CGCG--GCCGG-CGCGG-GCUG-GGGC- -5'
16127 5' -67.3 NC_004065.1 + 79104 0.67 0.481642
Target:  5'- cGACaaccCGCCGgaGCCGcCGUCgGACCCCu -3'
miRNA:   3'- aCUGc---GCGGC--CGGC-GCGGgCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 79671 0.69 0.38565
Target:  5'- gGAgGUGCCGaaCGUGCCCGACaUCCGc -3'
miRNA:   3'- aCUgCGCGGCcgGCGCGGGCUG-GGGC- -5'
16127 5' -67.3 NC_004065.1 + 80291 0.7 0.308863
Target:  5'- cGACGCGCUGGaCCGCuaugaguccgaggGCCggcgcggccgCGGCCCCc -3'
miRNA:   3'- aCUGCGCGGCC-GGCG-------------CGG----------GCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 80855 0.66 0.533785
Target:  5'- gGACgaGCGCCaGGCCagGUcUCCGGCCCCc -3'
miRNA:   3'- aCUG--CGCGG-CCGG--CGcGGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 82096 0.67 0.497041
Target:  5'- cGGCGaCGUCGcagucgaucuccaGCUGCGCCCGGCUgacguauCCGg -3'
miRNA:   3'- aCUGC-GCGGC-------------CGGCGCGGGCUGG-------GGC- -5'
16127 5' -67.3 NC_004065.1 + 82782 0.66 0.516156
Target:  5'- aGGCGU-CCGGUgGCG-CCGACCCa- -3'
miRNA:   3'- aCUGCGcGGCCGgCGCgGGCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 83398 0.69 0.388642
Target:  5'- gUGACgGCGUucaccaccgaagacaCGGCCcCGCCgaCGGCCCCGa -3'
miRNA:   3'- -ACUG-CGCG---------------GCCGGcGCGG--GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 85492 0.68 0.432093
Target:  5'- cGACcaugGUGCUGGCCaugucgcugGCGCUCGGCUUCGg -3'
miRNA:   3'- aCUG----CGCGGCCGG---------CGCGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 87610 0.7 0.3095
Target:  5'- cGGCGCGCCGGCagGCGaaagaUGGCCCgCGc -3'
miRNA:   3'- aCUGCGCGGCCGg-CGCgg---GCUGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 88939 0.68 0.447468
Target:  5'- aGGCGCGgCGGuaGCuggccagGCCCGcguagugccaGCCCCGg -3'
miRNA:   3'- aCUGCGCgGCCggCG-------CGGGC----------UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 89809 0.67 0.473187
Target:  5'- cGGCG-GCCGuCUGCGCCgCGACCUg- -3'
miRNA:   3'- aCUGCgCGGCcGGCGCGG-GCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 90120 0.71 0.278871
Target:  5'- cUGGCGcCGCCGGCCG-Ga--GGCCCCGc -3'
miRNA:   3'- -ACUGC-GCGGCCGGCgCgggCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 90169 0.66 0.551624
Target:  5'- cGGCucCGCCGccuccGCCGuCGCCCGcCuCCCGg -3'
miRNA:   3'- aCUGc-GCGGC-----CGGC-GCGGGCuG-GGGC- -5'
16127 5' -67.3 NC_004065.1 + 90630 0.72 0.234957
Target:  5'- -uGCGCGCgGGCCGU-CgCGACCCCa -3'
miRNA:   3'- acUGCGCGgCCGGCGcGgGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 92068 0.71 0.275362
Target:  5'- -cGCGCGCUcggagGGCCGCGCguugcgccagcagcuCCGAgCCCGg -3'
miRNA:   3'- acUGCGCGG-----CCGGCGCG---------------GGCUgGGGC- -5'
16127 5' -67.3 NC_004065.1 + 92206 0.66 0.533785
Target:  5'- aGACGCG--GGCCGCgaacagGCCCacauCCCCGa -3'
miRNA:   3'- aCUGCGCggCCGGCG------CGGGcu--GGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.