miRNA display CGI


Results 81 - 100 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 94372 0.66 0.540006
Target:  5'- cGACGCGCguuaCGGCCGCGgCgagcugucggcuggUGGCgCCGu -3'
miRNA:   3'- aCUGCGCG----GCCGGCGCgG--------------GCUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 94640 0.7 0.342627
Target:  5'- gGGCGCgGCCGG-CGCGUcaCCGuCCCUGa -3'
miRNA:   3'- aCUGCG-CGGCCgGCGCG--GGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 94881 0.67 0.490169
Target:  5'- cGACGUccccGUCGucaucacccGCCGCGCCCG-CCCgGu -3'
miRNA:   3'- aCUGCG----CGGC---------CGGCGCGGGCuGGGgC- -5'
16127 5' -67.3 NC_004065.1 + 96852 0.66 0.560611
Target:  5'- cGGCGCGCUGucGCCGCGggcgccguUCUGGCCgUGg -3'
miRNA:   3'- aCUGCGCGGC--CGGCGC--------GGGCUGGgGC- -5'
16127 5' -67.3 NC_004065.1 + 96967 0.68 0.440147
Target:  5'- cUGcCGCGCCuGCUGCGCC-GGCCguCCGu -3'
miRNA:   3'- -ACuGCGCGGcCGGCGCGGgCUGG--GGC- -5'
16127 5' -67.3 NC_004065.1 + 97318 0.69 0.393159
Target:  5'- -uACGUaaCCaGCCGC-CCCGACCCCGu -3'
miRNA:   3'- acUGCGc-GGcCGGCGcGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 97657 0.69 0.349552
Target:  5'- cGACGCGaCGGCC-UGCCCGugCuaCCGc -3'
miRNA:   3'- aCUGCGCgGCCGGcGCGGGCugG--GGC- -5'
16127 5' -67.3 NC_004065.1 + 98768 0.66 0.557011
Target:  5'- aGGCGCGCagaaCGuCCGcCGCCacggagacgaccaGACCCCGa -3'
miRNA:   3'- aCUGCGCG----GCcGGC-GCGGg------------CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 99224 0.66 0.516156
Target:  5'- ---aGCGCCGGCCagGCGaUCCG-CCUCGc -3'
miRNA:   3'- acugCGCGGCCGG--CGC-GGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 99827 0.69 0.38565
Target:  5'- cGAgGaUGCCGGCCaggcguuucaGCGUCUGcGCCCCGa -3'
miRNA:   3'- aCUgC-GCGGCCGG----------CGCGGGC-UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 99908 0.67 0.487603
Target:  5'- uUGAUGCuGCCGGCgucuucuucguccaUGaCGCCgGACCgCCGc -3'
miRNA:   3'- -ACUGCG-CGGCCG--------------GC-GCGGgCUGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 101612 0.74 0.176082
Target:  5'- gUGGCgGCGCCGccGCCGCugccGCUCGGCCCCc -3'
miRNA:   3'- -ACUG-CGCGGC--CGGCG----CGGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 102545 0.74 0.176082
Target:  5'- -aACGCuCCcGCCGCGCCCGACCaCCu -3'
miRNA:   3'- acUGCGcGGcCGGCGCGGGCUGG-GGc -5'
16127 5' -67.3 NC_004065.1 + 103459 0.66 0.533785
Target:  5'- -cGCGUGCU-GCUGCGCCaCGcGCCCCc -3'
miRNA:   3'- acUGCGCGGcCGGCGCGG-GC-UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 103768 0.71 0.29695
Target:  5'- cUGaACGCGCUGGgCG-GCUCGAuCCCCGc -3'
miRNA:   3'- -AC-UGCGCGGCCgGCgCGGGCU-GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 104608 0.66 0.54268
Target:  5'- aGGCgcugGCGCCGGCCGacuuCCaCGACCUgCGg -3'
miRNA:   3'- aCUG----CGCGGCCGGCgc--GG-GCUGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 104914 0.66 0.551624
Target:  5'- gGugGUGCCGGCgGCGUacaCGcACUaCCGc -3'
miRNA:   3'- aCugCGCGGCCGgCGCGg--GC-UGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 105926 0.66 0.551624
Target:  5'- cGGCGCugaGCCGGauGgGCCUGcACCCgGg -3'
miRNA:   3'- aCUGCG---CGGCCggCgCGGGC-UGGGgC- -5'
16127 5' -67.3 NC_004065.1 + 107802 0.66 0.516156
Target:  5'- cGACcCGCCGGCC-CGCUCGAggaCCa -3'
miRNA:   3'- aCUGcGCGGCCGGcGCGGGCUgg-GGc -5'
16127 5' -67.3 NC_004065.1 + 108802 0.69 0.38119
Target:  5'- cUGGCGUGgCGGCCGUucaGCCgcggcaacaggcugaCGGCCUCGg -3'
miRNA:   3'- -ACUGCGCgGCCGGCG---CGG---------------GCUGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.