miRNA display CGI


Results 101 - 120 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 109132 0.68 0.408459
Target:  5'- gUGcUGuCGCCGcgagacGCCGC-CCUGACCCCGg -3'
miRNA:   3'- -ACuGC-GCGGC------CGGCGcGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 109195 0.69 0.349552
Target:  5'- aGGC-CGgCGGCgGCGCCuCGGCCUCu -3'
miRNA:   3'- aCUGcGCgGCCGgCGCGG-GCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 109391 0.66 0.516156
Target:  5'- aGACaagccCGUCGGCCGCGgCgGACgCCa -3'
miRNA:   3'- aCUGc----GCGGCCGGCGCgGgCUGgGGc -5'
16127 5' -67.3 NC_004065.1 + 109435 0.66 0.533785
Target:  5'- aGcCGCGCUGGCgGCGCgUGuaucGCCUCa -3'
miRNA:   3'- aCuGCGCGGCCGgCGCGgGC----UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 109451 0.67 0.473187
Target:  5'- aGACcgGCGCCGGaggucccgcCCGCucGCgCCGACCgCCGc -3'
miRNA:   3'- aCUG--CGCGGCC---------GGCG--CG-GGCUGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 109590 0.81 0.056852
Target:  5'- cUGGCgGCGUaucaGGCCGCGCUCGACCCCc -3'
miRNA:   3'- -ACUG-CGCGg---CCGGCGCGGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 109882 0.71 0.273043
Target:  5'- cGGCGuCGCCgcGGCCGCGUCgGGgggUCCCGg -3'
miRNA:   3'- aCUGC-GCGG--CCGGCGCGGgCU---GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 110699 0.66 0.533785
Target:  5'- gUGACGUgaGCCGccGCCGCGaCUCGGCCg-- -3'
miRNA:   3'- -ACUGCG--CGGC--CGGCGC-GGGCUGGggc -5'
16127 5' -67.3 NC_004065.1 + 111600 0.67 0.481642
Target:  5'- gGACGcCGCCGuguucGCCgGCGagaUCGAUCCCGa -3'
miRNA:   3'- aCUGC-GCGGC-----CGG-CGCg--GGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 111771 0.72 0.250704
Target:  5'- cGAgGCGCCGGCgagcuccaCGCGUCCGucgacgGCUCCGa -3'
miRNA:   3'- aCUgCGCGGCCG--------GCGCGGGC------UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 112753 0.68 0.424126
Target:  5'- cUGAU-CGCCGGCUcguGCGCCUcuuGCCCCa -3'
miRNA:   3'- -ACUGcGCGGCCGG---CGCGGGc--UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 113436 0.66 0.524942
Target:  5'- aGA-GCGgCGGCCGggggGCCCGccguGCCCCu -3'
miRNA:   3'- aCUgCGCgGCCGGCg---CGGGC----UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 113702 0.67 0.507429
Target:  5'- cGACGCcgucGCCGcuGCCGC-CgCCGACgCCGa -3'
miRNA:   3'- aCUGCG----CGGC--CGGCGcG-GGCUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 114109 0.71 0.29695
Target:  5'- cGA-GCuGCCGGCCGagGCCgacgaCGGCCCCGa -3'
miRNA:   3'- aCUgCG-CGGCCGGCg-CGG-----GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 114227 0.66 0.54268
Target:  5'- cUGACa--CCGGCCGCaGUuuCCGugCCCGg -3'
miRNA:   3'- -ACUGcgcGGCCGGCG-CG--GGCugGGGC- -5'
16127 5' -67.3 NC_004065.1 + 114976 0.67 0.490169
Target:  5'- -cGCGCGCC-GuuGCcCUCGGCCCUGg -3'
miRNA:   3'- acUGCGCGGcCggCGcGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 115457 0.68 0.399998
Target:  5'- cGcCGCGCgGGUCGCGaUCCGGaugaugguaucccCCCCGa -3'
miRNA:   3'- aCuGCGCGgCCGGCGC-GGGCU-------------GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 116489 0.67 0.463141
Target:  5'- gGGCGagcugaGCCGGCCcagacagaagaGUCCGGCCUCGg -3'
miRNA:   3'- aCUGCg-----CGGCCGGcg---------CGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 117166 0.66 0.54268
Target:  5'- cGACaGCGCCGaCgGgGUCCGcCCCUGg -3'
miRNA:   3'- aCUG-CGCGGCcGgCgCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 117393 0.67 0.456506
Target:  5'- cGACGC-UCGGCCGCGCgCGcuggGCUCgCGg -3'
miRNA:   3'- aCUGCGcGGCCGGCGCGgGC----UGGG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.