miRNA display CGI


Results 121 - 140 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 119022 0.67 0.473187
Target:  5'- gGACGCGUgguacaUGGCCGUGCUCGucaacacgacGCUCUGa -3'
miRNA:   3'- aCUGCGCG------GCCGGCGCGGGC----------UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 119182 0.7 0.328409
Target:  5'- cGACGCgGgCGGcCCGCGCCCcgcacugGugCCUGg -3'
miRNA:   3'- aCUGCG-CgGCC-GGCGCGGG-------CugGGGC- -5'
16127 5' -67.3 NC_004065.1 + 120107 0.7 0.315926
Target:  5'- gGACGCGacggCGGCCGCGgCgGAcgagccgggaccCCCCGa -3'
miRNA:   3'- aCUGCGCg---GCCGGCGCgGgCU------------GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 120157 0.73 0.205954
Target:  5'- cGGCGaCGCCGGUgGCaccGCCCGGCaCCUGc -3'
miRNA:   3'- aCUGC-GCGGCCGgCG---CGGGCUG-GGGC- -5'
16127 5' -67.3 NC_004065.1 + 120352 0.68 0.408459
Target:  5'- cGAUGuCGUCGGagaGCGCCCggagGACCCUGc -3'
miRNA:   3'- aCUGC-GCGGCCgg-CGCGGG----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 120401 0.66 0.533785
Target:  5'- gGACGCuGCUccuucGCCGCGUucuucucgcucuCCGACCUCGu -3'
miRNA:   3'- aCUGCG-CGGc----CGGCGCG------------GGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 120628 0.66 0.533785
Target:  5'- cGugGCGUCcGCCGCGgCCGACg--- -3'
miRNA:   3'- aCugCGCGGcCGGCGCgGGCUGgggc -5'
16127 5' -67.3 NC_004065.1 + 122473 0.67 0.507429
Target:  5'- gUGGCGUcCCGGuaGCGCaCGACCCg- -3'
miRNA:   3'- -ACUGCGcGGCCggCGCGgGCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 123674 0.67 0.456506
Target:  5'- gUGGCGCGCUGcccguGCagcaGCGCCgGGCCgCCc -3'
miRNA:   3'- -ACUGCGCGGC-----CGg---CGCGGgCUGG-GGc -5'
16127 5' -67.3 NC_004065.1 + 123772 0.72 0.229895
Target:  5'- -cGCGCGCCGGUCGCcuGUCgGACCCa- -3'
miRNA:   3'- acUGCGCGGCCGGCG--CGGgCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 123877 0.67 0.489313
Target:  5'- cGcACGCGCCGcaggugcGCCGUGCacguCGucGCCCCGu -3'
miRNA:   3'- aC-UGCGCGGC-------CGGCGCGg---GC--UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 124467 0.76 0.143377
Target:  5'- cGGCGCGCCGuGCCGCuGCgCCGGgUCCa -3'
miRNA:   3'- aCUGCGCGGC-CGGCG-CG-GGCUgGGGc -5'
16127 5' -67.3 NC_004065.1 + 125468 0.71 0.303175
Target:  5'- cGGCGUGCacagCGGCCGCaccuGCCCGuuCUCCGu -3'
miRNA:   3'- aCUGCGCG----GCCGGCG----CGGGCu-GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 125676 0.74 0.180101
Target:  5'- cUGACGaacucuCGCCGGCagaGCGCCCuGACCCg- -3'
miRNA:   3'- -ACUGC------GCGGCCGg--CGCGGG-CUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 126724 0.67 0.498766
Target:  5'- cGAC-CGCUGaGCCuGcCGCCgCGGCCUCGa -3'
miRNA:   3'- aCUGcGCGGC-CGG-C-GCGG-GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 127458 0.8 0.07411
Target:  5'- gGACGCugaUGGCCGCGggaCCCGACCCCGg -3'
miRNA:   3'- aCUGCGcg-GCCGGCGC---GGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 128007 0.66 0.54268
Target:  5'- cGAgGUgGCCcGCCGCGCCaacuaCGACCUCu -3'
miRNA:   3'- aCUgCG-CGGcCGGCGCGG-----GCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 128415 0.66 0.54268
Target:  5'- cGGCaGCGgCGGCgGCGCC--GCCaCCGa -3'
miRNA:   3'- aCUG-CGCgGCCGgCGCGGgcUGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 128578 0.68 0.439337
Target:  5'- aUGACGaggagaacgggucCGCCGGCgGCGaccucuucUCCGACCUCa -3'
miRNA:   3'- -ACUGC-------------GCGGCCGgCGC--------GGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 129636 0.7 0.322451
Target:  5'- gGACcCGCCGGCUGCuGCCCaagGACCUg- -3'
miRNA:   3'- aCUGcGCGGCCGGCG-CGGG---CUGGGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.