miRNA display CGI


Results 1 - 20 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 229504 0.66 0.560611
Target:  5'- gGGCGCGCCa-CCGCGUaguaGACuCCCa -3'
miRNA:   3'- aCUGCGCGGccGGCGCGgg--CUG-GGGc -5'
16127 5' -67.3 NC_004065.1 + 223839 0.71 0.305062
Target:  5'- gGACGCGagcgacaacucguacUCGGCCGCccgGCCCGGCCaucucggCCGg -3'
miRNA:   3'- aCUGCGC---------------GGCCGGCG---CGGGCUGG-------GGC- -5'
16127 5' -67.3 NC_004065.1 + 223523 0.79 0.07963
Target:  5'- gGAUcuaGUGCCGGCCGCGaCCCGACCgUGg -3'
miRNA:   3'- aCUG---CGCGGCCGGCGC-GGGCUGGgGC- -5'
16127 5' -67.3 NC_004065.1 + 223099 0.7 0.335802
Target:  5'- cGGCGgaCGCCgaGGCCGUGCCCGcagcugaaGCCgCCGc -3'
miRNA:   3'- aCUGC--GCGG--CCGGCGCGGGC--------UGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 220762 0.68 0.447468
Target:  5'- aUGACGCGUgCGGUUaaggaaaacccagGC-UCCGACCCCGa -3'
miRNA:   3'- -ACUGCGCG-GCCGG-------------CGcGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 215659 0.71 0.267312
Target:  5'- cGAUGUuuUGGUggUGCGCCCGAUCCCGa -3'
miRNA:   3'- aCUGCGcgGCCG--GCGCGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 212366 0.68 0.448285
Target:  5'- cGAC-CGUCGGUCGUcaUCCGACUCCGg -3'
miRNA:   3'- aCUGcGCGGCCGGCGc-GGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 205530 0.66 0.557911
Target:  5'- cGGCGCucaggGCCGGCggcggugccaucuaCGCGCCCauguccgagcuGCCCCa -3'
miRNA:   3'- aCUGCG-----CGGCCG--------------GCGCGGGc----------UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 203852 0.7 0.340569
Target:  5'- gGACGCGCCGGCaCGgggaauaggacggcUGgCacgcaGACCCCGg -3'
miRNA:   3'- aCUGCGCGGCCG-GC--------------GCgGg----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 202739 0.66 0.524942
Target:  5'- aGACGCGUcguCGGCgGCGCCgccggucucuuCGuCCUCGu -3'
miRNA:   3'- aCUGCGCG---GCCGgCGCGG-----------GCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 202312 0.69 0.370918
Target:  5'- -aGCGCGCgagcacgGGCCaGaCGCCCGAUCCCu -3'
miRNA:   3'- acUGCGCGg------CCGG-C-GCGGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 200389 0.69 0.378236
Target:  5'- gGACGCGUCuacaucuaCGCGCCCGACgUCGa -3'
miRNA:   3'- aCUGCGCGGccg-----GCGCGGGCUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 200053 0.66 0.533785
Target:  5'- cUGcCGcCGCCGccGCCGCcaGCaCCGGuCCCCGa -3'
miRNA:   3'- -ACuGC-GCGGC--CGGCG--CG-GGCU-GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 199720 0.66 0.550727
Target:  5'- cGACGCGaaaaggauccugcCCGacCCGCagGCCCacGACCCCGa -3'
miRNA:   3'- aCUGCGC-------------GGCc-GGCG--CGGG--CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 199542 0.69 0.349552
Target:  5'- gGGCGCcuccaGCCGGgCGCGCCCcaucGugCCgCGg -3'
miRNA:   3'- aCUGCG-----CGGCCgGCGCGGG----CugGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 198920 0.67 0.490169
Target:  5'- gGugGUGCCuGCC-CGCUCcACCCUGg -3'
miRNA:   3'- aCugCGCGGcCGGcGCGGGcUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 198124 0.67 0.481642
Target:  5'- cGACGCGCCGcGUCaG-GCCCGcUCUCGa -3'
miRNA:   3'- aCUGCGCGGC-CGG-CgCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 197147 0.67 0.485044
Target:  5'- aGACGCucGCCGG-CGCGCCucuCGAccagggacgccagcuCCCCGc -3'
miRNA:   3'- aCUGCG--CGGCCgGCGCGG---GCU---------------GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 196625 0.7 0.329076
Target:  5'- gGAUGCGCCGGggcgaGCGCCUcgagaGGCUCCGc -3'
miRNA:   3'- aCUGCGCGGCCgg---CGCGGG-----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 196540 0.69 0.370918
Target:  5'- aGACGCcuGCCGGCgcguagGCGCCCacGGCCgCGa -3'
miRNA:   3'- aCUGCG--CGGCCGg-----CGCGGG--CUGGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.