miRNA display CGI


Results 21 - 40 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 196375 0.67 0.490169
Target:  5'- -cGCGCGCCGGacggucgaagCGCGCCCcgaacgcgauGGCCuuGg -3'
miRNA:   3'- acUGCGCGGCCg---------GCGCGGG----------CUGGggC- -5'
16127 5' -67.3 NC_004065.1 + 195764 0.67 0.472346
Target:  5'- cGACgGCGCCGuGUCGCGCugaccauggcggaCCGcggGCCCUGc -3'
miRNA:   3'- aCUG-CGCGGC-CGGCGCG-------------GGC---UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 194823 0.66 0.560611
Target:  5'- cGugGCGgUGGCCGCcacguucuccaGgCCGACCaCGg -3'
miRNA:   3'- aCugCGCgGCCGGCG-----------CgGGCUGGgGC- -5'
16127 5' -67.3 NC_004065.1 + 191844 0.67 0.472346
Target:  5'- cGugGUGaCGGCCGCGacuaucgCCGcgauggcGCCCCGa -3'
miRNA:   3'- aCugCGCgGCCGGCGCg------GGC-------UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 191313 0.73 0.205954
Target:  5'- gGAUgGUGCCGGCCGCGCgUGACaCCa -3'
miRNA:   3'- aCUG-CGCGGCCGGCGCGgGCUGgGGc -5'
16127 5' -67.3 NC_004065.1 + 191077 0.76 0.140107
Target:  5'- --cCGCGCCGGUCGCucgaGCUCGACaCCCGa -3'
miRNA:   3'- acuGCGCGGCCGGCG----CGGGCUG-GGGC- -5'
16127 5' -67.3 NC_004065.1 + 188518 0.66 0.560611
Target:  5'- cUGGCGgGaCCGcCCGCGCgcuccccgucCCGacGCCCCGg -3'
miRNA:   3'- -ACUGCgC-GGCcGGCGCG----------GGC--UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 182709 0.66 0.541788
Target:  5'- cGACGguaccgaCGCUGGUCGCGCCUcuuauACCCaCGu -3'
miRNA:   3'- aCUGC-------GCGGCCGGCGCGGGc----UGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 182643 0.67 0.490169
Target:  5'- gUGcCGaCGgCGGCCGCGCUgGACUgUGg -3'
miRNA:   3'- -ACuGC-GCgGCCGGCGCGGgCUGGgGC- -5'
16127 5' -67.3 NC_004065.1 + 181653 0.68 0.413902
Target:  5'- uUGACaucuuCGCCguggucggauacaaGGCCGCGaccucggucuUCCGACCCCGg -3'
miRNA:   3'- -ACUGc----GCGG--------------CCGGCGC----------GGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 179132 0.67 0.473187
Target:  5'- gGugGCGgUGGaguaCCGUccucGCCCGugCCCGu -3'
miRNA:   3'- aCugCGCgGCC----GGCG----CGGGCugGGGC- -5'
16127 5' -67.3 NC_004065.1 + 176786 0.66 0.516156
Target:  5'- cGAuCGCGCCGGCggagCGCGUUgGACCa-- -3'
miRNA:   3'- aCU-GCGCGGCCG----GCGCGGgCUGGggc -5'
16127 5' -67.3 NC_004065.1 + 173450 0.67 0.464807
Target:  5'- cGACGUaccGgUGGCgGCGCUCGACgCCa -3'
miRNA:   3'- aCUGCG---CgGCCGgCGCGGGCUGgGGc -5'
16127 5' -67.3 NC_004065.1 + 170447 0.66 0.54268
Target:  5'- gGACGcCGCCGGagGCGCCUucgcuGCCgCCGc -3'
miRNA:   3'- aCUGC-GCGGCCggCGCGGGc----UGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 170079 0.67 0.4936
Target:  5'- cUGGCGgGCaccacuccgggcuucUGGCCGCGCCgCGACaaCGu -3'
miRNA:   3'- -ACUGCgCG---------------GCCGGCGCGG-GCUGggGC- -5'
16127 5' -67.3 NC_004065.1 + 169914 0.75 0.164502
Target:  5'- cUGuACGCgGCCGGCCGCuucuacCCCGACCUCu -3'
miRNA:   3'- -AC-UGCG-CGGCCGGCGc-----GGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 169569 0.69 0.378236
Target:  5'- -uGCGCGCUGuuGCCGCuGUCgCGGCUCCGg -3'
miRNA:   3'- acUGCGCGGC--CGGCG-CGG-GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 169253 0.66 0.516156
Target:  5'- cGAgGCGggaGGCCGCgGCCCugugcGGCCUCGa -3'
miRNA:   3'- aCUgCGCgg-CCGGCG-CGGG-----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 168566 0.66 0.550727
Target:  5'- aUGGCGCagcgcaucacggaGCgGGUCGgG-CCGGCCCUGg -3'
miRNA:   3'- -ACUGCG-------------CGgCCGGCgCgGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 166143 0.66 0.54268
Target:  5'- aGACgucgGCGCCGGCgGCagcgGCgCCGACgUCGu -3'
miRNA:   3'- aCUG----CGCGGCCGgCG----CG-GGCUGgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.