miRNA display CGI


Results 41 - 60 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 164475 0.67 0.456506
Target:  5'- cGACcCGCCGGCgaCGCGCCCaGCgUCa -3'
miRNA:   3'- aCUGcGCGGCCG--GCGCGGGcUGgGGc -5'
16127 5' -67.3 NC_004065.1 + 163393 0.67 0.481642
Target:  5'- -aGCGCGuCCGccacgcagcGCCGCaGCCCGcgGCUCCGg -3'
miRNA:   3'- acUGCGC-GGC---------CGGCG-CGGGC--UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 162164 0.67 0.456506
Target:  5'- cGGC-CGCCGGCUGCGgCgcagcgucuucgCCGugCCCu -3'
miRNA:   3'- aCUGcGCGGCCGGCGC-G------------GGCugGGGc -5'
16127 5' -67.3 NC_004065.1 + 158158 0.69 0.363698
Target:  5'- cUGuCGCGCugguCGGCCGCGCUUuccgGAUCCCu -3'
miRNA:   3'- -ACuGCGCG----GCCGGCGCGGG----CUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 153277 0.81 0.061129
Target:  5'- aUGACGaggcCGCCGgcGCCGCGCCCGuCCCCGc -3'
miRNA:   3'- -ACUGC----GCGGC--CGGCGCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 151368 0.68 0.432093
Target:  5'- ---gGCGCCGGCCGCuGCgCUGGCggCCGa -3'
miRNA:   3'- acugCGCGGCCGGCG-CG-GGCUGg-GGC- -5'
16127 5' -67.3 NC_004065.1 + 151174 0.76 0.136905
Target:  5'- cUGGCGCGCCGGCCGC-CCUuccuACCCUu -3'
miRNA:   3'- -ACUGCGCGGCCGGCGcGGGc---UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 151089 0.71 0.267312
Target:  5'- -cGCGgGCCuGGUgGCGCCCGAgCUCGg -3'
miRNA:   3'- acUGCgCGG-CCGgCGCGGGCUgGGGC- -5'
16127 5' -67.3 NC_004065.1 + 150471 0.66 0.560611
Target:  5'- gGAaGCGCC-GCUGCGCCgcauCGACCgCCu -3'
miRNA:   3'- aCUgCGCGGcCGGCGCGG----GCUGG-GGc -5'
16127 5' -67.3 NC_004065.1 + 149707 0.71 0.303175
Target:  5'- cGGgGgGCCgcGGCCGCG-CCGGCCCuCGg -3'
miRNA:   3'- aCUgCgCGG--CCGGCGCgGGCUGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 149390 0.67 0.463974
Target:  5'- cGAC-CGCCGGCCauaucgaggaccgGUGCaaCCG-CCCCGa -3'
miRNA:   3'- aCUGcGCGGCCGG-------------CGCG--GGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 146815 0.68 0.424126
Target:  5'- gGAUGUGCCuGcCCGgGCCCGAauuUCCCu -3'
miRNA:   3'- aCUGCGCGGcC-GGCgCGGGCU---GGGGc -5'
16127 5' -67.3 NC_004065.1 + 146565 0.66 0.54268
Target:  5'- cGGCGuCGCgGGUaaggugccgcuCGUGCCgGAgCCCGg -3'
miRNA:   3'- aCUGC-GCGgCCG-----------GCGCGGgCUgGGGC- -5'
16127 5' -67.3 NC_004065.1 + 146417 0.66 0.551624
Target:  5'- -uGCGCuCCGGgggcCCGCGCuCCGucuucuuCCCCGg -3'
miRNA:   3'- acUGCGcGGCC----GGCGCG-GGCu------GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 145770 0.66 0.551624
Target:  5'- -cGCGCGCCGGUCGCgggcGCUCGcacagauCCUCa -3'
miRNA:   3'- acUGCGCGGCCGGCG----CGGGCu------GGGGc -5'
16127 5' -67.3 NC_004065.1 + 143225 0.69 0.378236
Target:  5'- aGGcCGCGUUcGCCGCGCCCGuCUUCGc -3'
miRNA:   3'- aCU-GCGCGGcCGGCGCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 142407 0.67 0.47656
Target:  5'- --uCGCGCgGGCCaucuuucgccugccgGCGCgCCGGCUCCu -3'
miRNA:   3'- acuGCGCGgCCGG---------------CGCG-GGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 141351 0.68 0.411564
Target:  5'- gGACGUcguccgcucgcggguGCUGGCgGCGCUCGACUCg- -3'
miRNA:   3'- aCUGCG---------------CGGCCGgCGCGGGCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 138821 0.67 0.490169
Target:  5'- cGGCgGCGCCGauGCCGCGCacgCCGACggcgcuUCCGc -3'
miRNA:   3'- aCUG-CGCGGC--CGGCGCG---GGCUG------GGGC- -5'
16127 5' -67.3 NC_004065.1 + 137928 0.68 0.411564
Target:  5'- cUGACGCGCCgGGCuCGgagcugcuggcgcaaCGCgCGGCCCUc -3'
miRNA:   3'- -ACUGCGCGG-CCG-GC---------------GCGgGCUGGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.