miRNA display CGI


Results 61 - 80 of 212 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 137479 0.7 0.342627
Target:  5'- -uGCGCGCgCGuGCgCGCGCCCG-CCCg- -3'
miRNA:   3'- acUGCGCG-GC-CG-GCGCGGGCuGGGgc -5'
16127 5' -67.3 NC_004065.1 + 135391 1.07 0.000803
Target:  5'- gUGACGCGCCGGCCGCGCCCGACCCCGu -3'
miRNA:   3'- -ACUGCGCGGCCGGCGCGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 133966 0.7 0.321794
Target:  5'- gGACGgGCaagccuauaucggCGGCCgGgGCCCGugCCCa -3'
miRNA:   3'- aCUGCgCG-------------GCCGG-CgCGGGCugGGGc -5'
16127 5' -67.3 NC_004065.1 + 133438 0.67 0.464807
Target:  5'- gGGCGCGUCGGCCuCGUucugcgauuguuCCG-CCUCGg -3'
miRNA:   3'- aCUGCGCGGCCGGcGCG------------GGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 132772 0.69 0.354458
Target:  5'- cGGCGCGaaGGUCgccagaagcgccguGCGCCggacgCGACCCCGa -3'
miRNA:   3'- aCUGCGCggCCGG--------------CGCGG-----GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 132017 0.66 0.516156
Target:  5'- -cACGCGCCGGCgGUGgU-GACCCaCGa -3'
miRNA:   3'- acUGCGCGGCCGgCGCgGgCUGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 131766 0.68 0.432093
Target:  5'- -cGCGCGCCcagGGCCGcCGuCCCGAgCCg- -3'
miRNA:   3'- acUGCGCGG---CCGGC-GC-GGGCUgGGgc -5'
16127 5' -67.3 NC_004065.1 + 130632 0.66 0.54268
Target:  5'- -aACGCGCCcGCCGCcaggcaGCCC-ACgCCCGu -3'
miRNA:   3'- acUGCGCGGcCGGCG------CGGGcUG-GGGC- -5'
16127 5' -67.3 NC_004065.1 + 130588 0.67 0.507429
Target:  5'- aGGCGCGCgaugucgaGGCgGCGUCUgccgcucgGGCCCCu -3'
miRNA:   3'- aCUGCGCGg-------CCGgCGCGGG--------CUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 130359 0.67 0.507429
Target:  5'- gGACGCuGUCGgcGCCGCGCcgCCGGCUUCu -3'
miRNA:   3'- aCUGCG-CGGC--CGGCGCG--GGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 130154 0.66 0.54268
Target:  5'- gGACGa---GGCCGuCGCUauccgCGACCCCGg -3'
miRNA:   3'- aCUGCgcggCCGGC-GCGG-----GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 129879 0.67 0.473187
Target:  5'- cGACcuGUGCCGcgcGCUGCGgCgGACCCUGa -3'
miRNA:   3'- aCUG--CGCGGC---CGGCGCgGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 129636 0.7 0.322451
Target:  5'- gGACcCGCCGGCUGCuGCCCaagGACCUg- -3'
miRNA:   3'- aCUGcGCGGCCGGCG-CGGG---CUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 128578 0.68 0.439337
Target:  5'- aUGACGaggagaacgggucCGCCGGCgGCGaccucuucUCCGACCUCa -3'
miRNA:   3'- -ACUGC-------------GCGGCCGgCGC--------GGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 128415 0.66 0.54268
Target:  5'- cGGCaGCGgCGGCgGCGCC--GCCaCCGa -3'
miRNA:   3'- aCUG-CGCgGCCGgCGCGGgcUGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 128007 0.66 0.54268
Target:  5'- cGAgGUgGCCcGCCGCGCCaacuaCGACCUCu -3'
miRNA:   3'- aCUgCG-CGGcCGGCGCGG-----GCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 127458 0.8 0.07411
Target:  5'- gGACGCugaUGGCCGCGggaCCCGACCCCGg -3'
miRNA:   3'- aCUGCGcg-GCCGGCGC---GGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 126724 0.67 0.498766
Target:  5'- cGAC-CGCUGaGCCuGcCGCCgCGGCCUCGa -3'
miRNA:   3'- aCUGcGCGGC-CGG-C-GCGG-GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 125676 0.74 0.180101
Target:  5'- cUGACGaacucuCGCCGGCagaGCGCCCuGACCCg- -3'
miRNA:   3'- -ACUGC------GCGGCCGg--CGCGGG-CUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 125468 0.71 0.303175
Target:  5'- cGGCGUGCacagCGGCCGCaccuGCCCGuuCUCCGu -3'
miRNA:   3'- aCUGCGCG----GCCGGCG----CGGGCu-GGGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.