Results 81 - 100 of 212 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16127 | 5' | -67.3 | NC_004065.1 | + | 124467 | 0.76 | 0.143377 |
Target: 5'- cGGCGCGCCGuGCCGCuGCgCCGGgUCCa -3' miRNA: 3'- aCUGCGCGGC-CGGCG-CG-GGCUgGGGc -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 123877 | 0.67 | 0.489313 |
Target: 5'- cGcACGCGCCGcaggugcGCCGUGCacguCGucGCCCCGu -3' miRNA: 3'- aC-UGCGCGGC-------CGGCGCGg---GC--UGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 123772 | 0.72 | 0.229895 |
Target: 5'- -cGCGCGCCGGUCGCcuGUCgGACCCa- -3' miRNA: 3'- acUGCGCGGCCGGCG--CGGgCUGGGgc -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 123674 | 0.67 | 0.456506 |
Target: 5'- gUGGCGCGCUGcccguGCagcaGCGCCgGGCCgCCc -3' miRNA: 3'- -ACUGCGCGGC-----CGg---CGCGGgCUGG-GGc -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 122473 | 0.67 | 0.507429 |
Target: 5'- gUGGCGUcCCGGuaGCGCaCGACCCg- -3' miRNA: 3'- -ACUGCGcGGCCggCGCGgGCUGGGgc -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 120628 | 0.66 | 0.533785 |
Target: 5'- cGugGCGUCcGCCGCGgCCGACg--- -3' miRNA: 3'- aCugCGCGGcCGGCGCgGGCUGgggc -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 120401 | 0.66 | 0.533785 |
Target: 5'- gGACGCuGCUccuucGCCGCGUucuucucgcucuCCGACCUCGu -3' miRNA: 3'- aCUGCG-CGGc----CGGCGCG------------GGCUGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 120352 | 0.68 | 0.408459 |
Target: 5'- cGAUGuCGUCGGagaGCGCCCggagGACCCUGc -3' miRNA: 3'- aCUGC-GCGGCCgg-CGCGGG----CUGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 120157 | 0.73 | 0.205954 |
Target: 5'- cGGCGaCGCCGGUgGCaccGCCCGGCaCCUGc -3' miRNA: 3'- aCUGC-GCGGCCGgCG---CGGGCUG-GGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 120107 | 0.7 | 0.315926 |
Target: 5'- gGACGCGacggCGGCCGCGgCgGAcgagccgggaccCCCCGa -3' miRNA: 3'- aCUGCGCg---GCCGGCGCgGgCU------------GGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 119182 | 0.7 | 0.328409 |
Target: 5'- cGACGCgGgCGGcCCGCGCCCcgcacugGugCCUGg -3' miRNA: 3'- aCUGCG-CgGCC-GGCGCGGG-------CugGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 119022 | 0.67 | 0.473187 |
Target: 5'- gGACGCGUgguacaUGGCCGUGCUCGucaacacgacGCUCUGa -3' miRNA: 3'- aCUGCGCG------GCCGGCGCGGGC----------UGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 117393 | 0.67 | 0.456506 |
Target: 5'- cGACGC-UCGGCCGCGCgCGcuggGCUCgCGg -3' miRNA: 3'- aCUGCGcGGCCGGCGCGgGC----UGGG-GC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 117166 | 0.66 | 0.54268 |
Target: 5'- cGACaGCGCCGaCgGgGUCCGcCCCUGg -3' miRNA: 3'- aCUG-CGCGGCcGgCgCGGGCuGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 116489 | 0.67 | 0.463141 |
Target: 5'- gGGCGagcugaGCCGGCCcagacagaagaGUCCGGCCUCGg -3' miRNA: 3'- aCUGCg-----CGGCCGGcg---------CGGGCUGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 115457 | 0.68 | 0.399998 |
Target: 5'- cGcCGCGCgGGUCGCGaUCCGGaugaugguaucccCCCCGa -3' miRNA: 3'- aCuGCGCGgCCGGCGC-GGGCU-------------GGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 114976 | 0.67 | 0.490169 |
Target: 5'- -cGCGCGCC-GuuGCcCUCGGCCCUGg -3' miRNA: 3'- acUGCGCGGcCggCGcGGGCUGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 114227 | 0.66 | 0.54268 |
Target: 5'- cUGACa--CCGGCCGCaGUuuCCGugCCCGg -3' miRNA: 3'- -ACUGcgcGGCCGGCG-CG--GGCugGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 114109 | 0.71 | 0.29695 |
Target: 5'- cGA-GCuGCCGGCCGagGCCgacgaCGGCCCCGa -3' miRNA: 3'- aCUgCG-CGGCCGGCg-CGG-----GCUGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 113702 | 0.67 | 0.507429 |
Target: 5'- cGACGCcgucGCCGcuGCCGC-CgCCGACgCCGa -3' miRNA: 3'- aCUGCG----CGGC--CGGCGcG-GGCUGgGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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