miRNA display CGI


Results 21 - 40 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 40820 0.71 0.278871
Target:  5'- gGACGCGuUCGGCCGCGuCCCuGACgUUGu -3'
miRNA:   3'- aCUGCGC-GGCCGGCGC-GGG-CUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 92068 0.71 0.275362
Target:  5'- -cGCGCGCUcggagGGCCGCGCguugcgccagcagcuCCGAgCCCGg -3'
miRNA:   3'- acUGCGCGG-----CCGGCGCG---------------GGCUgGGGC- -5'
16127 5' -67.3 NC_004065.1 + 25017 0.75 0.164502
Target:  5'- gGGCGCGgCaaggGGCCGUGuCCCGACCCUc -3'
miRNA:   3'- aCUGCGCgG----CCGGCGC-GGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 124467 0.76 0.143377
Target:  5'- cGGCGCGCCGuGCCGCuGCgCCGGgUCCa -3'
miRNA:   3'- aCUGCGCGGC-CGGCG-CG-GGCUgGGGc -5'
16127 5' -67.3 NC_004065.1 + 191077 0.76 0.140107
Target:  5'- --cCGCGCCGGUCGCucgaGCUCGACaCCCGa -3'
miRNA:   3'- acuGCGCGGCCGGCG----CGGGCUG-GGGC- -5'
16127 5' -67.3 NC_004065.1 + 66134 0.76 0.140107
Target:  5'- cUGGCGCGCUGGgCCGCGgaCCGGCgCCa -3'
miRNA:   3'- -ACUGCGCGGCC-GGCGCg-GGCUGgGGc -5'
16127 5' -67.3 NC_004065.1 + 151174 0.76 0.136905
Target:  5'- cUGGCGCGCCGGCCGC-CCUuccuACCCUu -3'
miRNA:   3'- -ACUGCGCGGCCGGCGcGGGc---UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 223523 0.79 0.07963
Target:  5'- gGAUcuaGUGCCGGCCGCGaCCCGACCgUGg -3'
miRNA:   3'- aCUG---CGCGGCCGGCGC-GGGCUGGgGC- -5'
16127 5' -67.3 NC_004065.1 + 127458 0.8 0.07411
Target:  5'- gGACGCugaUGGCCGCGggaCCCGACCCCGg -3'
miRNA:   3'- aCUGCGcg-GCCGGCGC---GGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 109590 0.81 0.056852
Target:  5'- cUGGCgGCGUaucaGGCCGCGCUCGACCCCc -3'
miRNA:   3'- -ACUG-CGCGg---CCGGCGCGGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 102545 0.74 0.176082
Target:  5'- -aACGCuCCcGCCGCGCCCGACCaCCu -3'
miRNA:   3'- acUGCGcGGcCGGCGCGGGCUGG-GGc -5'
16127 5' -67.3 NC_004065.1 + 125676 0.74 0.180101
Target:  5'- cUGACGaacucuCGCCGGCagaGCGCCCuGACCCg- -3'
miRNA:   3'- -ACUGC------GCGGCCGg--CGCGGG-CUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 109882 0.71 0.273043
Target:  5'- cGGCGuCGCCgcGGCCGCGUCgGGgggUCCCGg -3'
miRNA:   3'- aCUGC-GCGG--CCGGCGCGGgCU---GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 151089 0.71 0.267312
Target:  5'- -cGCGgGCCuGGUgGCGCCCGAgCUCGg -3'
miRNA:   3'- acUGCgCGG-CCGgCGCGGGCUgGGGC- -5'
16127 5' -67.3 NC_004065.1 + 78479 0.72 0.26168
Target:  5'- --cCGCGCCGcGUcaagCGCGCCCGACaccgCCCGg -3'
miRNA:   3'- acuGCGCGGC-CG----GCGCGGGCUG----GGGC- -5'
16127 5' -67.3 NC_004065.1 + 24483 0.72 0.252869
Target:  5'- gGGCGCguagauggcaccgccGCCGGCCcugaGCG-CCGGCCCCa -3'
miRNA:   3'- aCUGCG---------------CGGCCGG----CGCgGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 111771 0.72 0.250704
Target:  5'- cGAgGCGCCGGCgagcuccaCGCGUCCGucgacgGCUCCGa -3'
miRNA:   3'- aCUgCGCGGCCG--------GCGCGGGC------UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 68162 0.72 0.240112
Target:  5'- gUGAuCGCGgCGGCgCGCGCgacggagcugUCGGCCCCGc -3'
miRNA:   3'- -ACU-GCGCgGCCG-GCGCG----------GGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 123772 0.72 0.229895
Target:  5'- -cGCGCGCCGGUCGCcuGUCgGACCCa- -3'
miRNA:   3'- acUGCGCGGCCGGCG--CGGgCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 191313 0.73 0.205954
Target:  5'- gGAUgGUGCCGGCCGCGCgUGACaCCa -3'
miRNA:   3'- aCUG-CGCGGCCGGCGCGgGCUGgGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.