miRNA display CGI


Results 61 - 80 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 92068 0.71 0.275362
Target:  5'- -cGCGCGCUcggagGGCCGCGCguugcgccagcagcuCCGAgCCCGg -3'
miRNA:   3'- acUGCGCGG-----CCGGCGCG---------------GGCUgGGGC- -5'
16127 5' -67.3 NC_004065.1 + 40820 0.71 0.278871
Target:  5'- gGACGCGuUCGGCCGCGuCCCuGACgUUGu -3'
miRNA:   3'- aCUGCGC-GGCCGGCGC-GGG-CUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 77962 0.7 0.328409
Target:  5'- gUGACGUcgagccccgagacGCUGGCCGCGgcgagCCG-CCCCGg -3'
miRNA:   3'- -ACUGCG-------------CGGCCGGCGCg----GGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 78657 0.7 0.329076
Target:  5'- cGGCcgccaGCGCagCGGCCgGCGCCgCGGCgCCCGa -3'
miRNA:   3'- aCUG-----CGCG--GCCGG-CGCGG-GCUG-GGGC- -5'
16127 5' -67.3 NC_004065.1 + 223099 0.7 0.335802
Target:  5'- cGGCGgaCGCCgaGGCCGUGCCCGcagcugaaGCCgCCGc -3'
miRNA:   3'- aCUGC--GCGG--CCGGCGCGGGC--------UGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 109195 0.69 0.349552
Target:  5'- aGGC-CGgCGGCgGCGCCuCGGCCUCu -3'
miRNA:   3'- aCUGcGCgGCCGgCGCGG-GCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 199542 0.69 0.349552
Target:  5'- gGGCGCcuccaGCCGGgCGCGCCCcaucGugCCgCGg -3'
miRNA:   3'- aCUGCG-----CGGCCgGCGCGGG----CugGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 196540 0.69 0.370918
Target:  5'- aGACGCcuGCCGGCgcguagGCGCCCacGGCCgCGa -3'
miRNA:   3'- aCUGCG--CGGCCGg-----CGCGGG--CUGGgGC- -5'
16127 5' -67.3 NC_004065.1 + 42057 0.69 0.378236
Target:  5'- cGGCGUGCUGGCgcuggUGUGgCUGACCUCGc -3'
miRNA:   3'- aCUGCGCGGCCG-----GCGCgGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 143225 0.69 0.378236
Target:  5'- aGGcCGCGUUcGCCGCGCCCGuCUUCGc -3'
miRNA:   3'- aCU-GCGCGGcCGGCGCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 133966 0.7 0.321794
Target:  5'- gGACGgGCaagccuauaucggCGGCCgGgGCCCGugCCCa -3'
miRNA:   3'- aCUGCgCG-------------GCCGG-CgCGGGCugGGGc -5'
16127 5' -67.3 NC_004065.1 + 30984 0.7 0.3095
Target:  5'- gGAUGCGCUcGCCGCGUCgGGCgCUGa -3'
miRNA:   3'- aCUGCGCGGcCGGCGCGGgCUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 90120 0.71 0.278871
Target:  5'- cUGGCGcCGCCGGCCG-Ga--GGCCCCGc -3'
miRNA:   3'- -ACUGC-GCGGCCGGCgCgggCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 47289 0.71 0.290824
Target:  5'- cGACGUGUCGGUgGC-CCCGGCgucgCCCGu -3'
miRNA:   3'- aCUGCGCGGCCGgCGcGGGCUG----GGGC- -5'
16127 5' -67.3 NC_004065.1 + 40902 0.71 0.29695
Target:  5'- cGcACGCGCCGGCU-UGUCgGGCCCUGa -3'
miRNA:   3'- aC-UGCGCGGCCGGcGCGGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 114109 0.71 0.29695
Target:  5'- cGA-GCuGCCGGCCGagGCCgacgaCGGCCCCGa -3'
miRNA:   3'- aCUgCG-CGGCCGGCg-CGG-----GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 549 0.71 0.303175
Target:  5'- --cCGCGaCGaGCgGCGCCCGGCCCgGa -3'
miRNA:   3'- acuGCGCgGC-CGgCGCGGGCUGGGgC- -5'
16127 5' -67.3 NC_004065.1 + 125468 0.71 0.303175
Target:  5'- cGGCGUGCacagCGGCCGCaccuGCCCGuuCUCCGu -3'
miRNA:   3'- aCUGCGCG----GCCGGCG----CGGGCu-GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 149707 0.71 0.303175
Target:  5'- cGGgGgGCCgcGGCCGCG-CCGGCCCuCGg -3'
miRNA:   3'- aCUgCgCGG--CCGGCGCgGGCUGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 223839 0.71 0.305062
Target:  5'- gGACGCGagcgacaacucguacUCGGCCGCccgGCCCGGCCaucucggCCGg -3'
miRNA:   3'- aCUGCGC---------------GGCCGGCG---CGGGCUGG-------GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.