Results 81 - 100 of 212 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16127 | 5' | -67.3 | NC_004065.1 | + | 69469 | 0.69 | 0.393159 |
Target: 5'- aUGuCGCGCCGGCUGCGguaCgCGGCCaaCCa -3' miRNA: 3'- -ACuGCGCGGCCGGCGCg--G-GCUGG--GGc -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 45857 | 0.68 | 0.400763 |
Target: 5'- gGACGCGauGGCCGCuCCgacggaggaaGACCCCa -3' miRNA: 3'- aCUGCGCggCCGGCGcGGg---------CUGGGGc -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 71957 | 0.68 | 0.400763 |
Target: 5'- cGACGcCGCCGGUgGaGCCgGGCagCCCGg -3' miRNA: 3'- aCUGC-GCGGCCGgCgCGGgCUG--GGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 35467 | 0.68 | 0.411564 |
Target: 5'- cGACGCGCUGcGCgGUGCCCGugacgacguucacggGCacgaCCGg -3' miRNA: 3'- aCUGCGCGGC-CGgCGCGGGC---------------UGg---GGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 26946 | 0.68 | 0.416248 |
Target: 5'- gGAC-CGCuccggCGGCCGCGgCgGGCUCCGg -3' miRNA: 3'- aCUGcGCG-----GCCGGCGCgGgCUGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 33385 | 0.68 | 0.423334 |
Target: 5'- -uGCGCGCgGaGCCucucgagGCGCUCG-CCCCGg -3' miRNA: 3'- acUGCGCGgC-CGG-------CGCGGGCuGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 66373 | 0.68 | 0.424126 |
Target: 5'- cGGCGCGCugaucgucgagCGGCUGCGCUCG-CUgaCCGa -3' miRNA: 3'- aCUGCGCG-----------GCCGGCGCGGGCuGG--GGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 143225 | 0.69 | 0.378236 |
Target: 5'- aGGcCGCGUUcGCCGCGCCCGuCUUCGc -3' miRNA: 3'- aCU-GCGCGGcCGGCGCGGGCuGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 42057 | 0.69 | 0.378236 |
Target: 5'- cGGCGUGCUGGCgcuggUGUGgCUGACCUCGc -3' miRNA: 3'- aCUGCGCGGCCG-----GCGCgGGCUGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 196540 | 0.69 | 0.370918 |
Target: 5'- aGACGCcuGCCGGCgcguagGCGCCCacGGCCgCGa -3' miRNA: 3'- aCUGCG--CGGCCGg-----CGCGGG--CUGGgGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 149707 | 0.71 | 0.303175 |
Target: 5'- cGGgGgGCCgcGGCCGCG-CCGGCCCuCGg -3' miRNA: 3'- aCUgCgCGG--CCGGCGCgGGCUGGG-GC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 223839 | 0.71 | 0.305062 |
Target: 5'- gGACGCGagcgacaacucguacUCGGCCGCccgGCCCGGCCaucucggCCGg -3' miRNA: 3'- aCUGCGC---------------GGCCGGCG---CGGGCUGG-------GGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 30984 | 0.7 | 0.3095 |
Target: 5'- gGAUGCGCUcGCCGCGUCgGGCgCUGa -3' miRNA: 3'- aCUGCGCGGcCGGCGCGGgCUGgGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 133966 | 0.7 | 0.321794 |
Target: 5'- gGACGgGCaagccuauaucggCGGCCgGgGCCCGugCCCa -3' miRNA: 3'- aCUGCgCG-------------GCCGG-CgCGGGCugGGGc -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 77962 | 0.7 | 0.328409 |
Target: 5'- gUGACGUcgagccccgagacGCUGGCCGCGgcgagCCG-CCCCGg -3' miRNA: 3'- -ACUGCG-------------CGGCCGGCGCg----GGCuGGGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 78657 | 0.7 | 0.329076 |
Target: 5'- cGGCcgccaGCGCagCGGCCgGCGCCgCGGCgCCCGa -3' miRNA: 3'- aCUG-----CGCG--GCCGG-CGCGG-GCUG-GGGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 223099 | 0.7 | 0.335802 |
Target: 5'- cGGCGgaCGCCgaGGCCGUGCCCGcagcugaaGCCgCCGc -3' miRNA: 3'- aCUGC--GCGG--CCGGCGCGGGC--------UGG-GGC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 109195 | 0.69 | 0.349552 |
Target: 5'- aGGC-CGgCGGCgGCGCCuCGGCCUCu -3' miRNA: 3'- aCUGcGCgGCCGgCGCGG-GCUGGGGc -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 199542 | 0.69 | 0.349552 |
Target: 5'- gGGCGCcuccaGCCGGgCGCGCCCcaucGugCCgCGg -3' miRNA: 3'- aCUGCG-----CGGCCgGCGCGGG----CugGG-GC- -5' |
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16127 | 5' | -67.3 | NC_004065.1 | + | 112753 | 0.68 | 0.424126 |
Target: 5'- cUGAU-CGCCGGCUcguGCGCCUcuuGCCCCa -3' miRNA: 3'- -ACUGcGCGGCCGG---CGCGGGc--UGGGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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