miRNA display CGI


Results 101 - 120 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 45857 0.68 0.400763
Target:  5'- gGACGCGauGGCCGCuCCgacggaggaaGACCCCa -3'
miRNA:   3'- aCUGCGCggCCGGCGcGGg---------CUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 69469 0.69 0.393159
Target:  5'- aUGuCGCGCCGGCUGCGguaCgCGGCCaaCCa -3'
miRNA:   3'- -ACuGCGCGGCCGGCGCg--G-GCUGG--GGc -5'
16127 5' -67.3 NC_004065.1 + 133966 0.7 0.321794
Target:  5'- gGACGgGCaagccuauaucggCGGCCgGgGCCCGugCCCa -3'
miRNA:   3'- aCUGCgCG-------------GCCGG-CgCGGGCugGGGc -5'
16127 5' -67.3 NC_004065.1 + 77962 0.7 0.328409
Target:  5'- gUGACGUcgagccccgagacGCUGGCCGCGgcgagCCG-CCCCGg -3'
miRNA:   3'- -ACUGCG-------------CGGCCGGCGCg----GGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 78657 0.7 0.329076
Target:  5'- cGGCcgccaGCGCagCGGCCgGCGCCgCGGCgCCCGa -3'
miRNA:   3'- aCUG-----CGCG--GCCGG-CGCGG-GCUG-GGGC- -5'
16127 5' -67.3 NC_004065.1 + 223099 0.7 0.335802
Target:  5'- cGGCGgaCGCCgaGGCCGUGCCCGcagcugaaGCCgCCGc -3'
miRNA:   3'- aCUGC--GCGG--CCGGCGCGGGC--------UGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 109195 0.69 0.349552
Target:  5'- aGGC-CGgCGGCgGCGCCuCGGCCUCu -3'
miRNA:   3'- aCUGcGCgGCCGgCGCGG-GCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 199542 0.69 0.349552
Target:  5'- gGGCGCcuccaGCCGGgCGCGCCCcaucGugCCgCGg -3'
miRNA:   3'- aCUGCG-----CGGCCgGCGCGGG----CugGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 196540 0.69 0.370918
Target:  5'- aGACGCcuGCCGGCgcguagGCGCCCacGGCCgCGa -3'
miRNA:   3'- aCUGCG--CGGCCGg-----CGCGGG--CUGGgGC- -5'
16127 5' -67.3 NC_004065.1 + 42057 0.69 0.378236
Target:  5'- cGGCGUGCUGGCgcuggUGUGgCUGACCUCGc -3'
miRNA:   3'- aCUGCGCGGCCG-----GCGCgGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 143225 0.69 0.378236
Target:  5'- aGGcCGCGUUcGCCGCGCCCGuCUUCGc -3'
miRNA:   3'- aCU-GCGCGGcCGGCGCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 169569 0.69 0.378236
Target:  5'- -uGCGCGCUGuuGCCGCuGUCgCGGCUCCGg -3'
miRNA:   3'- acUGCGCGGC--CGGCG-CGG-GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 99827 0.69 0.38565
Target:  5'- cGAgGaUGCCGGCCaggcguuucaGCGUCUGcGCCCCGa -3'
miRNA:   3'- aCUgC-GCGGCCGG----------CGCGGGC-UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 83398 0.69 0.388642
Target:  5'- gUGACgGCGUucaccaccgaagacaCGGCCcCGCCgaCGGCCCCGa -3'
miRNA:   3'- -ACUG-CGCG---------------GCCGGcGCGG--GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 32884 0.73 0.205954
Target:  5'- aGGCGCGCCGGCgaGCGUCUG-CCgCUGg -3'
miRNA:   3'- aCUGCGCGGCCGg-CGCGGGCuGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 101612 0.74 0.176082
Target:  5'- gUGGCgGCGCCGccGCCGCugccGCUCGGCCCCc -3'
miRNA:   3'- -ACUG-CGCGGC--CGGCG----CGGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 169914 0.75 0.164502
Target:  5'- cUGuACGCgGCCGGCCGCuucuacCCCGACCUCu -3'
miRNA:   3'- -AC-UGCG-CGGCCGGCGc-----GGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 71497 0.76 0.13377
Target:  5'- aGAUGCGCCGGUCGCGCUCGcaguCUgCGa -3'
miRNA:   3'- aCUGCGCGGCCGGCGCGGGCu---GGgGC- -5'
16127 5' -67.3 NC_004065.1 + 30485 0.78 0.105882
Target:  5'- gGGCGCGcCCGGCUggagGCGCCCGGCUgCGc -3'
miRNA:   3'- aCUGCGC-GGCCGG----CGCGGGCUGGgGC- -5'
16127 5' -67.3 NC_004065.1 + 188518 0.66 0.560611
Target:  5'- cUGGCGgGaCCGcCCGCGCgcuccccgucCCGacGCCCCGg -3'
miRNA:   3'- -ACUGCgC-GGCcGGCGCG----------GGC--UGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.