miRNA display CGI


Results 41 - 60 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 115457 0.68 0.399998
Target:  5'- cGcCGCGCgGGUCGCGaUCCGGaugaugguaucccCCCCGa -3'
miRNA:   3'- aCuGCGCGgCCGGCGC-GGGCU-------------GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 196625 0.7 0.329076
Target:  5'- gGAUGCGCCGGggcgaGCGCCUcgagaGGCUCCGc -3'
miRNA:   3'- aCUGCGCGGCCgg---CGCGGG-----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 71497 0.76 0.13377
Target:  5'- aGAUGCGCCGGUCGCGCUCGcaguCUgCGa -3'
miRNA:   3'- aCUGCGCGGCCGGCGCGGGCu---GGgGC- -5'
16127 5' -67.3 NC_004065.1 + 97318 0.69 0.393159
Target:  5'- -uACGUaaCCaGCCGC-CCCGACCCCGu -3'
miRNA:   3'- acUGCGc-GGcCGGCGcGGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 30485 0.78 0.105882
Target:  5'- gGGCGCGcCCGGCUggagGCGCCCGGCUgCGc -3'
miRNA:   3'- aCUGCGC-GGCCGG----CGCGGGCUGGgGC- -5'
16127 5' -67.3 NC_004065.1 + 79104 0.67 0.481642
Target:  5'- cGACaaccCGCCGgaGCCGcCGUCgGACCCCu -3'
miRNA:   3'- aCUGc---GCGGC--CGGC-GCGGgCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 101612 0.74 0.176082
Target:  5'- gUGGCgGCGCCGccGCCGCugccGCUCGGCCCCc -3'
miRNA:   3'- -ACUG-CGCGGC--CGGCG----CGGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 89809 0.67 0.473187
Target:  5'- cGGCG-GCCGuCUGCGCCgCGACCUg- -3'
miRNA:   3'- aCUGCgCGGCcGGCGCGG-GCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 149390 0.67 0.463974
Target:  5'- cGAC-CGCCGGCCauaucgaggaccgGUGCaaCCG-CCCCGa -3'
miRNA:   3'- aCUGcGCGGCCGG-------------CGCG--GGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 88939 0.68 0.447468
Target:  5'- aGGCGCGgCGGuaGCuggccagGCCCGcguagugccaGCCCCGg -3'
miRNA:   3'- aCUGCGCgGCCggCG-------CGGGC----------UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 131766 0.68 0.432093
Target:  5'- -cGCGCGCCcagGGCCGcCGuCCCGAgCCg- -3'
miRNA:   3'- acUGCGCGG---CCGGC-GC-GGGCUgGGgc -5'
16127 5' -67.3 NC_004065.1 + 141351 0.68 0.411564
Target:  5'- gGACGUcguccgcucgcggguGCUGGCgGCGCUCGACUCg- -3'
miRNA:   3'- aCUGCG---------------CGGCCGgCGCGGGCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 120352 0.68 0.408459
Target:  5'- cGAUGuCGUCGGagaGCGCCCggagGACCCUGc -3'
miRNA:   3'- aCUGC-GCGGCCgg-CGCGGG----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 79671 0.69 0.38565
Target:  5'- gGAgGUGCCGaaCGUGCCCGACaUCCGc -3'
miRNA:   3'- aCUgCGCGGCcgGCGCGGGCUG-GGGC- -5'
16127 5' -67.3 NC_004065.1 + 200389 0.69 0.378236
Target:  5'- gGACGCGUCuacaucuaCGCGCCCGACgUCGa -3'
miRNA:   3'- aCUGCGCGGccg-----GCGCGGGCUGgGGC- -5'
16127 5' -67.3 NC_004065.1 + 97657 0.69 0.349552
Target:  5'- cGACGCGaCGGCC-UGCCCGugCuaCCGc -3'
miRNA:   3'- aCUGCGCgGCCGGcGCGGGCugG--GGC- -5'
16127 5' -67.3 NC_004065.1 + 203852 0.7 0.340569
Target:  5'- gGACGCGCCGGCaCGgggaauaggacggcUGgCacgcaGACCCCGg -3'
miRNA:   3'- aCUGCGCGGCCG-GC--------------GCgGg----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 120107 0.7 0.315926
Target:  5'- gGACGCGacggCGGCCGCGgCgGAcgagccgggaccCCCCGa -3'
miRNA:   3'- aCUGCGCg---GCCGGCGCgGgCU------------GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 103768 0.71 0.29695
Target:  5'- cUGaACGCGCUGGgCG-GCUCGAuCCCCGc -3'
miRNA:   3'- -AC-UGCGCGGCCgGCgCGGGCU-GGGGC- -5'
16127 5' -67.3 NC_004065.1 + 67542 0.73 0.224926
Target:  5'- gUGGCGCuccucguccugGCCGGCCGCGCgaGGCCuucgCCGa -3'
miRNA:   3'- -ACUGCG-----------CGGCCGGCGCGggCUGG----GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.