miRNA display CGI


Results 61 - 80 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 120352 0.68 0.408459
Target:  5'- cGAUGuCGUCGGagaGCGCCCggagGACCCUGc -3'
miRNA:   3'- aCUGC-GCGGCCgg-CGCGGG----CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 648 0.68 0.432093
Target:  5'- gUGAgUGCGuCCGGCCGCGCguagCGAgcaCCCGc -3'
miRNA:   3'- -ACU-GCGC-GGCCGGCGCGg---GCUg--GGGC- -5'
16127 5' -67.3 NC_004065.1 + 32884 0.73 0.205954
Target:  5'- aGGCGCGCCGGCgaGCGUCUG-CCgCUGg -3'
miRNA:   3'- aCUGCGCGGCCGg-CGCGGGCuGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 90630 0.72 0.234957
Target:  5'- -uGCGCGCgGGCCGU-CgCGACCCCa -3'
miRNA:   3'- acUGCGCGgCCGGCGcGgGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 80291 0.7 0.308863
Target:  5'- cGACGCGCUGGaCCGCuaugaguccgaggGCCggcgcggccgCGGCCCCc -3'
miRNA:   3'- aCUGCGCGGCC-GGCG-------------CGG----------GCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 129636 0.7 0.322451
Target:  5'- gGACcCGCCGGCUGCuGCCCaagGACCUg- -3'
miRNA:   3'- aCUGcGCGGCCGGCG-CGGG---CUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 137479 0.7 0.342627
Target:  5'- -uGCGCGCgCGuGCgCGCGCCCG-CCCg- -3'
miRNA:   3'- acUGCGCG-GC-CG-GCGCGGGCuGGGgc -5'
16127 5' -67.3 NC_004065.1 + 132772 0.69 0.354458
Target:  5'- cGGCGCGaaGGUCgccagaagcgccguGCGCCggacgCGACCCCGa -3'
miRNA:   3'- aCUGCGCggCCGG--------------CGCGG-----GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 108802 0.69 0.38119
Target:  5'- cUGGCGUGgCGGCCGUucaGCCgcggcaacaggcugaCGGCCUCGg -3'
miRNA:   3'- -ACUGCGCgGCCGGCG---CGG---------------GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 29229 0.69 0.38565
Target:  5'- --cCGCGCCGagacGCCGuCGCCCG-CCaCCGc -3'
miRNA:   3'- acuGCGCGGC----CGGC-GCGGGCuGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 132017 0.66 0.516156
Target:  5'- -cACGCGCCGGCgGUGgU-GACCCaCGa -3'
miRNA:   3'- acUGCGCGGCCGgCGCgGgCUGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 28849 0.67 0.510912
Target:  5'- gGACGCGCCGcuuggugucggcgcuGCUGCGUgaCGaggacugcuggcGCCCCGa -3'
miRNA:   3'- aCUGCGCGGC---------------CGGCGCGg-GC------------UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 128578 0.68 0.439337
Target:  5'- aUGACGaggagaacgggucCGCCGGCgGCGaccucuucUCCGACCUCa -3'
miRNA:   3'- -ACUGC-------------GCGGCCGgCGC--------GGGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 162164 0.67 0.456506
Target:  5'- cGGC-CGCCGGCUGCGgCgcagcgucuucgCCGugCCCu -3'
miRNA:   3'- aCUGcGCGGCCGGCGC-G------------GGCugGGGc -5'
16127 5' -67.3 NC_004065.1 + 89809 0.67 0.473187
Target:  5'- cGGCG-GCCGuCUGCGCCgCGACCUg- -3'
miRNA:   3'- aCUGCgCGGCcGGCGCGG-GCUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 79104 0.67 0.481642
Target:  5'- cGACaaccCGCCGgaGCCGcCGUCgGACCCCu -3'
miRNA:   3'- aCUGc---GCGGC--CGGC-GCGGgCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 99908 0.67 0.487603
Target:  5'- uUGAUGCuGCCGGCgucuucuucguccaUGaCGCCgGACCgCCGc -3'
miRNA:   3'- -ACUGCG-CGGCCG--------------GC-GCGGgCUGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 138821 0.67 0.490169
Target:  5'- cGGCgGCGCCGauGCCGCGCacgCCGACggcgcuUCCGc -3'
miRNA:   3'- aCUG-CGCGGC--CGGCGCG---GGCUG------GGGC- -5'
16127 5' -67.3 NC_004065.1 + 35127 0.67 0.498766
Target:  5'- cGGCgGCGCCGuggucucgauGCCGaaGCCCaaGACCCUGg -3'
miRNA:   3'- aCUG-CGCGGC----------CGGCg-CGGG--CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 65223 0.67 0.507429
Target:  5'- aGA-GUGCCGGCggugGCGCCCG-UCUCGa -3'
miRNA:   3'- aCUgCGCGGCCGg---CGCGGGCuGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.