miRNA display CGI


Results 81 - 100 of 212 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16127 5' -67.3 NC_004065.1 + 151368 0.68 0.432093
Target:  5'- ---gGCGCCGGCCGCuGCgCUGGCggCCGa -3'
miRNA:   3'- acugCGCGGCCGGCG-CG-GGCUGg-GGC- -5'
16127 5' -67.3 NC_004065.1 + 212366 0.68 0.448285
Target:  5'- cGAC-CGUCGGUCGUcaUCCGACUCCGg -3'
miRNA:   3'- aCUGcGCGGCCGGCGc-GGGCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 195764 0.67 0.472346
Target:  5'- cGACgGCGCCGuGUCGCGCugaccauggcggaCCGcggGCCCUGc -3'
miRNA:   3'- aCUG-CGCGGC-CGGCGCG-------------GGC---UGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 129879 0.67 0.473187
Target:  5'- cGACcuGUGCCGcgcGCUGCGgCgGACCCUGa -3'
miRNA:   3'- aCUG--CGCGGC---CGGCGCgGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 66728 0.67 0.481642
Target:  5'- cUGGCGC-CCGuGCCGU--CgGACCCCGg -3'
miRNA:   3'- -ACUGCGcGGC-CGGCGcgGgCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 45101 0.67 0.490169
Target:  5'- aGAC-CGucucCCGGCCGCuCCCGAgccaCCCGg -3'
miRNA:   3'- aCUGcGC----GGCCGGCGcGGGCUg---GGGC- -5'
16127 5' -67.3 NC_004065.1 + 35127 0.67 0.498766
Target:  5'- cGGCgGCGCCGuggucucgauGCCGaaGCCCaaGACCCUGg -3'
miRNA:   3'- aCUG-CGCGGC----------CGGCg-CGGG--CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 65223 0.67 0.507429
Target:  5'- aGA-GUGCCGGCggugGCGCCCG-UCUCGa -3'
miRNA:   3'- aCUgCGCGGCCGg---CGCGGGCuGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 108802 0.69 0.38119
Target:  5'- cUGGCGUGgCGGCCGUucaGCCgcggcaacaggcugaCGGCCUCGg -3'
miRNA:   3'- -ACUGCGCgGCCGGCG---CGG---------------GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 103459 0.66 0.533785
Target:  5'- -cGCGUGCU-GCUGCGCCaCGcGCCCCc -3'
miRNA:   3'- acUGCGCGGcCGGCGCGG-GC-UGGGGc -5'
16127 5' -67.3 NC_004065.1 + 104608 0.66 0.54268
Target:  5'- aGGCgcugGCGCCGGCCGacuuCCaCGACCUgCGg -3'
miRNA:   3'- aCUG----CGCGGCCGGCgc--GG-GCUGGG-GC- -5'
16127 5' -67.3 NC_004065.1 + 98768 0.66 0.557011
Target:  5'- aGGCGCGCagaaCGuCCGcCGCCacggagacgaccaGACCCCGa -3'
miRNA:   3'- aCUGCGCG----GCcGGC-GCGGg------------CUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 32884 0.73 0.205954
Target:  5'- aGGCGCGCCGGCgaGCGUCUG-CCgCUGg -3'
miRNA:   3'- aCUGCGCGGCCGg-CGCGGGCuGG-GGC- -5'
16127 5' -67.3 NC_004065.1 + 90630 0.72 0.234957
Target:  5'- -uGCGCGCgGGCCGU-CgCGACCCCa -3'
miRNA:   3'- acUGCGCGgCCGGCGcGgGCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 80291 0.7 0.308863
Target:  5'- cGACGCGCUGGaCCGCuaugaguccgaggGCCggcgcggccgCGGCCCCc -3'
miRNA:   3'- aCUGCGCGGCC-GGCG-------------CGG----------GCUGGGGc -5'
16127 5' -67.3 NC_004065.1 + 129636 0.7 0.322451
Target:  5'- gGACcCGCCGGCUGCuGCCCaagGACCUg- -3'
miRNA:   3'- aCUGcGCGGCCGGCG-CGGG---CUGGGgc -5'
16127 5' -67.3 NC_004065.1 + 137479 0.7 0.342627
Target:  5'- -uGCGCGCgCGuGCgCGCGCCCG-CCCg- -3'
miRNA:   3'- acUGCGCG-GC-CG-GCGCGGGCuGGGgc -5'
16127 5' -67.3 NC_004065.1 + 132772 0.69 0.354458
Target:  5'- cGGCGCGaaGGUCgccagaagcgccguGCGCCggacgCGACCCCGa -3'
miRNA:   3'- aCUGCGCggCCGG--------------CGCGG-----GCUGGGGC- -5'
16127 5' -67.3 NC_004065.1 + 133966 0.7 0.321794
Target:  5'- gGACGgGCaagccuauaucggCGGCCgGgGCCCGugCCCa -3'
miRNA:   3'- aCUGCgCG-------------GCCGG-CgCGGGCugGGGc -5'
16127 5' -67.3 NC_004065.1 + 48754 0.67 0.464807
Target:  5'- aGAUGcCGCCGGUgGCGCCgaagagcaucaCGaACCUCGu -3'
miRNA:   3'- aCUGC-GCGGCCGgCGCGG-----------GC-UGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.