miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16129 3' -58.2 NC_004065.1 + 203816 0.66 0.900259
Target:  5'- aGugGGGguucucggACAGGcguucGAGGUCGaaagGGACGCg -3'
miRNA:   3'- -UugUCCa-------UGUCC-----CUCCGGCa---CCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 228320 0.66 0.900259
Target:  5'- cGGCGGGUGCuuuGGGcGGUg--GGACGUa -3'
miRNA:   3'- -UUGUCCAUGu--CCCuCCGgcaCCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 103703 0.66 0.89398
Target:  5'- cGguGGgcgGCGGGGAGcGCCuggcGGGCGUg -3'
miRNA:   3'- uUguCCa--UGUCCCUC-CGGca--CCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 214494 0.66 0.887488
Target:  5'- aGGCGGGUGC-GGGAcGGUCgGUGGAaaCGg -3'
miRNA:   3'- -UUGUCCAUGuCCCU-CCGG-CACCU--GCg -5'
16129 3' -58.2 NC_004065.1 + 148520 0.66 0.887488
Target:  5'- gAACAGGUACAGGGA---CGUGcacaccagcuuGAUGCa -3'
miRNA:   3'- -UUGUCCAUGUCCCUccgGCAC-----------CUGCG- -5'
16129 3' -58.2 NC_004065.1 + 166136 0.66 0.885499
Target:  5'- -cCAGGUugAGGGcucgggugacgugcGGGUgGUGGuccuuCGCg -3'
miRNA:   3'- uuGUCCAugUCCC--------------UCCGgCACCu----GCG- -5'
16129 3' -58.2 NC_004065.1 + 105097 0.66 0.880787
Target:  5'- gAACcuGGUGCGcGuGGuGGCCGacgacgugccgcUGGACGCg -3'
miRNA:   3'- -UUGu-CCAUGU-C-CCuCCGGC------------ACCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 229661 0.66 0.880787
Target:  5'- cGGCAGugGCAGGuGGGcGUCG-GGGCGCg -3'
miRNA:   3'- -UUGUCcaUGUCC-CUC-CGGCaCCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 184375 0.66 0.873879
Target:  5'- cGACAcGGUACuggugAGGGAGacgguGUCGcGGACGCc -3'
miRNA:   3'- -UUGU-CCAUG-----UCCCUC-----CGGCaCCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 174133 0.66 0.873879
Target:  5'- uGAgAGGUGCGGcaucGGCC-UGGACGCc -3'
miRNA:   3'- -UUgUCCAUGUCccu-CCGGcACCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 141715 0.66 0.873879
Target:  5'- -uCAGGcGCGacGAGGCCGaGGACGUg -3'
miRNA:   3'- uuGUCCaUGUccCUCCGGCaCCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 96758 0.66 0.871767
Target:  5'- gAGCAGGgcgACGGcGGAggcggcaucgcGGCCGUcuucgacgacucuuGGACGUg -3'
miRNA:   3'- -UUGUCCa--UGUC-CCU-----------CCGGCA--------------CCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 149304 0.67 0.86677
Target:  5'- ---cGGUuucACGGGGGuagcGGCCG-GGAUGCu -3'
miRNA:   3'- uuguCCA---UGUCCCU----CCGGCaCCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 82314 0.67 0.86677
Target:  5'- uACAGGUugGGGaugugcccGAGGCCGUaGcCGUa -3'
miRNA:   3'- uUGUCCAugUCC--------CUCCGGCAcCuGCG- -5'
16129 3' -58.2 NC_004065.1 + 186136 0.67 0.86677
Target:  5'- uACAGaagaACccugAGGGuGGCCGUGGAgGCc -3'
miRNA:   3'- uUGUCca--UG----UCCCuCCGGCACCUgCG- -5'
16129 3' -58.2 NC_004065.1 + 89715 0.67 0.86677
Target:  5'- --gGGGUACAGGcGcAGGaa-UGGACGCa -3'
miRNA:   3'- uugUCCAUGUCC-C-UCCggcACCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 169918 0.67 0.859465
Target:  5'- gGACGGGUugGGGGAugauaacgGGuUCGgGGACGg -3'
miRNA:   3'- -UUGUCCAugUCCCU--------CC-GGCaCCUGCg -5'
16129 3' -58.2 NC_004065.1 + 196806 0.67 0.844287
Target:  5'- cGACgAGGcGguGGGGGGUCGUGGucaccUGCg -3'
miRNA:   3'- -UUG-UCCaUguCCCUCCGGCACCu----GCG- -5'
16129 3' -58.2 NC_004065.1 + 203001 0.67 0.844287
Target:  5'- -uCGGGUGgAGGGuGGUaagauuggcggCGUGGAgGCu -3'
miRNA:   3'- uuGUCCAUgUCCCuCCG-----------GCACCUgCG- -5'
16129 3' -58.2 NC_004065.1 + 107161 0.67 0.844287
Target:  5'- gGGCAGcucGCAGGuGGGGC--UGGACGCg -3'
miRNA:   3'- -UUGUCca-UGUCC-CUCCGgcACCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.