Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16129 | 3' | -58.2 | NC_004065.1 | + | 138287 | 1.09 | 0.002453 |
Target: 5'- cAACAGGUACAGGGAGGCCGUGGACGCg -3' miRNA: 3'- -UUGUCCAUGUCCCUCCGGCACCUGCG- -5' |
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16129 | 3' | -58.2 | NC_004065.1 | + | 89825 | 0.78 | 0.271172 |
Target: 5'- cGACAGG-ACGGGGgagaAGGCCGUGG-CGUa -3' miRNA: 3'- -UUGUCCaUGUCCC----UCCGGCACCuGCG- -5' |
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16129 | 3' | -58.2 | NC_004065.1 | + | 149694 | 0.75 | 0.417875 |
Target: 5'- uGCAGGUgaacGCcGGGGGGCCGcGGcCGCg -3' miRNA: 3'- uUGUCCA----UGuCCCUCCGGCaCCuGCG- -5' |
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16129 | 3' | -58.2 | NC_004065.1 | + | 68497 | 0.75 | 0.417875 |
Target: 5'- gAGCAGGcuCAGGuGAGGCgGcGGACGCa -3' miRNA: 3'- -UUGUCCauGUCC-CUCCGgCaCCUGCG- -5' |
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16129 | 3' | -58.2 | NC_004065.1 | + | 142647 | 0.72 | 0.554823 |
Target: 5'- cGCAGGUGCucAGGGAguucguGGCCGagGGGCGa -3' miRNA: 3'- uUGUCCAUG--UCCCU------CCGGCa-CCUGCg -5' |
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16129 | 3' | -58.2 | NC_004065.1 | + | 90770 | 0.7 | 0.672677 |
Target: 5'- aGACGGGaaACAGGGAGGCgacgcgcuguccCGgcaGGACGUg -3' miRNA: 3'- -UUGUCCa-UGUCCCUCCG------------GCa--CCUGCG- -5' |
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16129 | 3' | -58.2 | NC_004065.1 | + | 41431 | 0.7 | 0.692228 |
Target: 5'- uGACGGaccgagACGGGGugcuGGCCGUGGAgaGCg -3' miRNA: 3'- -UUGUCca----UGUCCCu---CCGGCACCUg-CG- -5' |
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16129 | 3' | -58.2 | NC_004065.1 | + | 118991 | 0.7 | 0.71063 |
Target: 5'- -uCAGGUA-AGGGAugaagagGGCCGcgugguUGGACGCg -3' miRNA: 3'- uuGUCCAUgUCCCU-------CCGGC------ACCUGCG- -5' |
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16129 | 3' | -58.2 | NC_004065.1 | + | 31794 | 0.7 | 0.711593 |
Target: 5'- --gGGGUGCuGGGcuacAGGCCGgggggccugccGGACGCg -3' miRNA: 3'- uugUCCAUGuCCC----UCCGGCa----------CCUGCG- -5' |
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16129 | 3' | -58.2 | NC_004065.1 | + | 8737 | 0.7 | 0.711593 |
Target: 5'- aAACGug-ACGaccGGAGGCCGUGGugGCg -3' miRNA: 3'- -UUGUccaUGUc--CCUCCGGCACCugCG- -5' |
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16129 | 3' | -58.2 | NC_004065.1 | + | 72112 | 0.69 | 0.721185 |
Target: 5'- aGACuGG-ACAGG-AGGaCgGUGGACGCg -3' miRNA: 3'- -UUGuCCaUGUCCcUCC-GgCACCUGCG- -5' |
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16129 | 3' | -58.2 | NC_004065.1 | + | 27822 | 0.69 | 0.721185 |
Target: 5'- -uCGGGUACcccccGGGGugguggcuGGCCGUGGugcCGCg -3' miRNA: 3'- uuGUCCAUG-----UCCCu-------CCGGCACCu--GCG- -5' |
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16129 | 3' | -58.2 | NC_004065.1 | + | 139474 | 0.69 | 0.730706 |
Target: 5'- -uCAGGUuCGaGGGGGCCGUcGGGCGg -3' miRNA: 3'- uuGUCCAuGUcCCUCCGGCA-CCUGCg -5' |
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16129 | 3' | -58.2 | NC_004065.1 | + | 33148 | 0.69 | 0.740147 |
Target: 5'- --aAGG-GCAGGGGGauGCCGUuGACGCg -3' miRNA: 3'- uugUCCaUGUCCCUC--CGGCAcCUGCG- -5' |
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16129 | 3' | -58.2 | NC_004065.1 | + | 1952 | 0.69 | 0.749501 |
Target: 5'- -gUAGGUGCcccccgugaugAGGGAGGCCc--GACGCu -3' miRNA: 3'- uuGUCCAUG-----------UCCCUCCGGcacCUGCG- -5' |
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16129 | 3' | -58.2 | NC_004065.1 | + | 93604 | 0.69 | 0.749501 |
Target: 5'- uGACGGGgaugAGGGGGGCCaG-GaGACGCa -3' miRNA: 3'- -UUGUCCaug-UCCCUCCGG-CaC-CUGCG- -5' |
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16129 | 3' | -58.2 | NC_004065.1 | + | 69138 | 0.69 | 0.749501 |
Target: 5'- cGACaAGGUGCuGGGGAaGCUGUcGACGCu -3' miRNA: 3'- -UUG-UCCAUG-UCCCUcCGGCAcCUGCG- -5' |
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16129 | 3' | -58.2 | NC_004065.1 | + | 17935 | 0.69 | 0.749501 |
Target: 5'- gGGCAGGUACgauGGGGucgcAGGUCGccGGACGg -3' miRNA: 3'- -UUGUCCAUG---UCCC----UCCGGCa-CCUGCg -5' |
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16129 | 3' | -58.2 | NC_004065.1 | + | 189757 | 0.68 | 0.785874 |
Target: 5'- gAugAGGauUGCGGuGGcGGCaGUGGACGCu -3' miRNA: 3'- -UugUCC--AUGUC-CCuCCGgCACCUGCG- -5' |
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16129 | 3' | -58.2 | NC_004065.1 | + | 122011 | 0.68 | 0.794666 |
Target: 5'- --aAGGU-C-GGGAGGUCGggaggGGGCGCu -3' miRNA: 3'- uugUCCAuGuCCCUCCGGCa----CCUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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