miRNA display CGI


Results 21 - 40 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16129 3' -58.2 NC_004065.1 + 54397 0.67 0.836426
Target:  5'- gGACAGGUAguaacgccuCAGGuGGGGaCGUGGuuugugACGCa -3'
miRNA:   3'- -UUGUCCAU---------GUCC-CUCCgGCACC------UGCG- -5'
16129 3' -58.2 NC_004065.1 + 197474 0.67 0.828392
Target:  5'- gGugGGGUGgGGGGGGGUgaugGUGGGgGUg -3'
miRNA:   3'- -UugUCCAUgUCCCUCCGg---CACCUgCG- -5'
16129 3' -58.2 NC_004065.1 + 29425 0.67 0.828392
Target:  5'- -cCAGG-GCAGGGAGaagacgguGCCGggguaGGugGCg -3'
miRNA:   3'- uuGUCCaUGUCCCUC--------CGGCa----CCugCG- -5'
16129 3' -58.2 NC_004065.1 + 6673 0.68 0.823491
Target:  5'- uGGCAGGaUGCGGGGAacccgaguugccgauGuGCCGacGACGCg -3'
miRNA:   3'- -UUGUCC-AUGUCCCU---------------C-CGGCacCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 51579 0.68 0.820192
Target:  5'- aGACAGG-ACAGccGGAGGCuaCGUGGcccccaACGCc -3'
miRNA:   3'- -UUGUCCaUGUC--CCUCCG--GCACC------UGCG- -5'
16129 3' -58.2 NC_004065.1 + 179664 0.68 0.811832
Target:  5'- -uCAGGaugacaGCGGGGGGGCuCG-GGAuCGCg -3'
miRNA:   3'- uuGUCCa-----UGUCCCUCCG-GCaCCU-GCG- -5'
16129 3' -58.2 NC_004065.1 + 78017 0.68 0.806744
Target:  5'- aGGCGGGUgACAucgauggcgugcgccGGGucccugaugAGGCCGgcgGGGCGCa -3'
miRNA:   3'- -UUGUCCA-UGU---------------CCC---------UCCGGCa--CCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 122011 0.68 0.794666
Target:  5'- --aAGGU-C-GGGAGGUCGggaggGGGCGCu -3'
miRNA:   3'- uugUCCAuGuCCCUCCGGCa----CCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 189757 0.68 0.785874
Target:  5'- gAugAGGauUGCGGuGGcGGCaGUGGACGCu -3'
miRNA:   3'- -UugUCC--AUGUC-CCuCCGgCACCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 1952 0.69 0.749501
Target:  5'- -gUAGGUGCcccccgugaugAGGGAGGCCc--GACGCu -3'
miRNA:   3'- uuGUCCAUG-----------UCCCUCCGGcacCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 93604 0.69 0.749501
Target:  5'- uGACGGGgaugAGGGGGGCCaG-GaGACGCa -3'
miRNA:   3'- -UUGUCCaug-UCCCUCCGG-CaC-CUGCG- -5'
16129 3' -58.2 NC_004065.1 + 17935 0.69 0.749501
Target:  5'- gGGCAGGUACgauGGGGucgcAGGUCGccGGACGg -3'
miRNA:   3'- -UUGUCCAUG---UCCC----UCCGGCa-CCUGCg -5'
16129 3' -58.2 NC_004065.1 + 69138 0.69 0.749501
Target:  5'- cGACaAGGUGCuGGGGAaGCUGUcGACGCu -3'
miRNA:   3'- -UUG-UCCAUG-UCCCUcCGGCAcCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 33148 0.69 0.740147
Target:  5'- --aAGG-GCAGGGGGauGCCGUuGACGCg -3'
miRNA:   3'- uugUCCaUGUCCCUC--CGGCAcCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 139474 0.69 0.730706
Target:  5'- -uCAGGUuCGaGGGGGCCGUcGGGCGg -3'
miRNA:   3'- uuGUCCAuGUcCCUCCGGCA-CCUGCg -5'
16129 3' -58.2 NC_004065.1 + 72112 0.69 0.721185
Target:  5'- aGACuGG-ACAGG-AGGaCgGUGGACGCg -3'
miRNA:   3'- -UUGuCCaUGUCCcUCC-GgCACCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 27822 0.69 0.721185
Target:  5'- -uCGGGUACcccccGGGGugguggcuGGCCGUGGugcCGCg -3'
miRNA:   3'- uuGUCCAUG-----UCCCu-------CCGGCACCu--GCG- -5'
16129 3' -58.2 NC_004065.1 + 8737 0.7 0.711593
Target:  5'- aAACGug-ACGaccGGAGGCCGUGGugGCg -3'
miRNA:   3'- -UUGUccaUGUc--CCUCCGGCACCugCG- -5'
16129 3' -58.2 NC_004065.1 + 31794 0.7 0.711593
Target:  5'- --gGGGUGCuGGGcuacAGGCCGgggggccugccGGACGCg -3'
miRNA:   3'- uugUCCAUGuCCC----UCCGGCa----------CCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 118991 0.7 0.71063
Target:  5'- -uCAGGUA-AGGGAugaagagGGCCGcgugguUGGACGCg -3'
miRNA:   3'- uuGUCCAUgUCCCU-------CCGGC------ACCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.