miRNA display CGI


Results 1 - 20 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16129 3' -58.2 NC_004065.1 + 1952 0.69 0.749501
Target:  5'- -gUAGGUGCcccccgugaugAGGGAGGCCc--GACGCu -3'
miRNA:   3'- uuGUCCAUG-----------UCCCUCCGGcacCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 6673 0.68 0.823491
Target:  5'- uGGCAGGaUGCGGGGAacccgaguugccgauGuGCCGacGACGCg -3'
miRNA:   3'- -UUGUCC-AUGUCCCU---------------C-CGGCacCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 8737 0.7 0.711593
Target:  5'- aAACGug-ACGaccGGAGGCCGUGGugGCg -3'
miRNA:   3'- -UUGUccaUGUc--CCUCCGGCACCugCG- -5'
16129 3' -58.2 NC_004065.1 + 17935 0.69 0.749501
Target:  5'- gGGCAGGUACgauGGGGucgcAGGUCGccGGACGg -3'
miRNA:   3'- -UUGUCCAUG---UCCC----UCCGGCa-CCUGCg -5'
16129 3' -58.2 NC_004065.1 + 27822 0.69 0.721185
Target:  5'- -uCGGGUACcccccGGGGugguggcuGGCCGUGGugcCGCg -3'
miRNA:   3'- uuGUCCAUG-----UCCCu-------CCGGCACCu--GCG- -5'
16129 3' -58.2 NC_004065.1 + 29425 0.67 0.828392
Target:  5'- -cCAGG-GCAGGGAGaagacgguGCCGggguaGGugGCg -3'
miRNA:   3'- uuGUCCaUGUCCCUC--------CGGCa----CCugCG- -5'
16129 3' -58.2 NC_004065.1 + 31794 0.7 0.711593
Target:  5'- --gGGGUGCuGGGcuacAGGCCGgggggccugccGGACGCg -3'
miRNA:   3'- uugUCCAUGuCCC----UCCGGCa----------CCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 33148 0.69 0.740147
Target:  5'- --aAGG-GCAGGGGGauGCCGUuGACGCg -3'
miRNA:   3'- uugUCCaUGUCCCUC--CGGCAcCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 41431 0.7 0.692228
Target:  5'- uGACGGaccgagACGGGGugcuGGCCGUGGAgaGCg -3'
miRNA:   3'- -UUGUCca----UGUCCCu---CCGGCACCUg-CG- -5'
16129 3' -58.2 NC_004065.1 + 51579 0.68 0.820192
Target:  5'- aGACAGG-ACAGccGGAGGCuaCGUGGcccccaACGCc -3'
miRNA:   3'- -UUGUCCaUGUC--CCUCCG--GCACC------UGCG- -5'
16129 3' -58.2 NC_004065.1 + 54397 0.67 0.836426
Target:  5'- gGACAGGUAguaacgccuCAGGuGGGGaCGUGGuuugugACGCa -3'
miRNA:   3'- -UUGUCCAU---------GUCC-CUCCgGCACC------UGCG- -5'
16129 3' -58.2 NC_004065.1 + 68497 0.75 0.417875
Target:  5'- gAGCAGGcuCAGGuGAGGCgGcGGACGCa -3'
miRNA:   3'- -UUGUCCauGUCC-CUCCGgCaCCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 69138 0.69 0.749501
Target:  5'- cGACaAGGUGCuGGGGAaGCUGUcGACGCu -3'
miRNA:   3'- -UUG-UCCAUG-UCCCUcCGGCAcCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 72112 0.69 0.721185
Target:  5'- aGACuGG-ACAGG-AGGaCgGUGGACGCg -3'
miRNA:   3'- -UUGuCCaUGUCCcUCC-GgCACCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 78017 0.68 0.806744
Target:  5'- aGGCGGGUgACAucgauggcgugcgccGGGucccugaugAGGCCGgcgGGGCGCa -3'
miRNA:   3'- -UUGUCCA-UGU---------------CCC---------UCCGGCa--CCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 82314 0.67 0.86677
Target:  5'- uACAGGUugGGGaugugcccGAGGCCGUaGcCGUa -3'
miRNA:   3'- uUGUCCAugUCC--------CUCCGGCAcCuGCG- -5'
16129 3' -58.2 NC_004065.1 + 89715 0.67 0.86677
Target:  5'- --gGGGUACAGGcGcAGGaa-UGGACGCa -3'
miRNA:   3'- uugUCCAUGUCC-C-UCCggcACCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 89825 0.78 0.271172
Target:  5'- cGACAGG-ACGGGGgagaAGGCCGUGG-CGUa -3'
miRNA:   3'- -UUGUCCaUGUCCC----UCCGGCACCuGCG- -5'
16129 3' -58.2 NC_004065.1 + 90770 0.7 0.672677
Target:  5'- aGACGGGaaACAGGGAGGCgacgcgcuguccCGgcaGGACGUg -3'
miRNA:   3'- -UUGUCCa-UGUCCCUCCG------------GCa--CCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 93604 0.69 0.749501
Target:  5'- uGACGGGgaugAGGGGGGCCaG-GaGACGCa -3'
miRNA:   3'- -UUGUCCaug-UCCCUCCGG-CaC-CUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.