miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16129 3' -58.2 NC_004065.1 + 138287 1.09 0.002453
Target:  5'- cAACAGGUACAGGGAGGCCGUGGACGCg -3'
miRNA:   3'- -UUGUCCAUGUCCCUCCGGCACCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 197474 0.67 0.828392
Target:  5'- gGugGGGUGgGGGGGGGUgaugGUGGGgGUg -3'
miRNA:   3'- -UugUCCAUgUCCCUCCGg---CACCUgCG- -5'
16129 3' -58.2 NC_004065.1 + 196806 0.67 0.844287
Target:  5'- cGACgAGGcGguGGGGGGUCGUGGucaccUGCg -3'
miRNA:   3'- -UUG-UCCaUguCCCUCCGGCACCu----GCG- -5'
16129 3' -58.2 NC_004065.1 + 169918 0.67 0.859465
Target:  5'- gGACGGGUugGGGGAugauaacgGGuUCGgGGACGg -3'
miRNA:   3'- -UUGUCCAugUCCCU--------CC-GGCaCCUGCg -5'
16129 3' -58.2 NC_004065.1 + 186136 0.67 0.86677
Target:  5'- uACAGaagaACccugAGGGuGGCCGUGGAgGCc -3'
miRNA:   3'- uUGUCca--UG----UCCCuCCGGCACCUgCG- -5'
16129 3' -58.2 NC_004065.1 + 82314 0.67 0.86677
Target:  5'- uACAGGUugGGGaugugcccGAGGCCGUaGcCGUa -3'
miRNA:   3'- uUGUCCAugUCC--------CUCCGGCAcCuGCG- -5'
16129 3' -58.2 NC_004065.1 + 96758 0.66 0.871767
Target:  5'- gAGCAGGgcgACGGcGGAggcggcaucgcGGCCGUcuucgacgacucuuGGACGUg -3'
miRNA:   3'- -UUGUCCa--UGUC-CCU-----------CCGGCA--------------CCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 229661 0.66 0.880787
Target:  5'- cGGCAGugGCAGGuGGGcGUCG-GGGCGCg -3'
miRNA:   3'- -UUGUCcaUGUCC-CUC-CGGCaCCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 148520 0.66 0.887488
Target:  5'- gAACAGGUACAGGGA---CGUGcacaccagcuuGAUGCa -3'
miRNA:   3'- -UUGUCCAUGUCCCUccgGCAC-----------CUGCG- -5'
16129 3' -58.2 NC_004065.1 + 29425 0.67 0.828392
Target:  5'- -cCAGG-GCAGGGAGaagacgguGCCGggguaGGugGCg -3'
miRNA:   3'- uuGUCCaUGUCCCUC--------CGGCa----CCugCG- -5'
16129 3' -58.2 NC_004065.1 + 122011 0.68 0.794666
Target:  5'- --aAGGU-C-GGGAGGUCGggaggGGGCGCu -3'
miRNA:   3'- uugUCCAuGuCCCUCCGGCa----CCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 89825 0.78 0.271172
Target:  5'- cGACAGG-ACGGGGgagaAGGCCGUGG-CGUa -3'
miRNA:   3'- -UUGUCCaUGUCCC----UCCGGCACCuGCG- -5'
16129 3' -58.2 NC_004065.1 + 149694 0.75 0.417875
Target:  5'- uGCAGGUgaacGCcGGGGGGCCGcGGcCGCg -3'
miRNA:   3'- uUGUCCA----UGuCCCUCCGGCaCCuGCG- -5'
16129 3' -58.2 NC_004065.1 + 142647 0.72 0.554823
Target:  5'- cGCAGGUGCucAGGGAguucguGGCCGagGGGCGa -3'
miRNA:   3'- uUGUCCAUG--UCCCU------CCGGCa-CCUGCg -5'
16129 3' -58.2 NC_004065.1 + 118991 0.7 0.71063
Target:  5'- -uCAGGUA-AGGGAugaagagGGCCGcgugguUGGACGCg -3'
miRNA:   3'- uuGUCCAUgUCCCU-------CCGGC------ACCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 72112 0.69 0.721185
Target:  5'- aGACuGG-ACAGG-AGGaCgGUGGACGCg -3'
miRNA:   3'- -UUGuCCaUGUCCcUCC-GgCACCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 33148 0.69 0.740147
Target:  5'- --aAGG-GCAGGGGGauGCCGUuGACGCg -3'
miRNA:   3'- uugUCCaUGUCCCUC--CGGCAcCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 17935 0.69 0.749501
Target:  5'- gGGCAGGUACgauGGGGucgcAGGUCGccGGACGg -3'
miRNA:   3'- -UUGUCCAUG---UCCC----UCCGGCa-CCUGCg -5'
16129 3' -58.2 NC_004065.1 + 69138 0.69 0.749501
Target:  5'- cGACaAGGUGCuGGGGAaGCUGUcGACGCu -3'
miRNA:   3'- -UUG-UCCAUG-UCCCUcCGGCAcCUGCG- -5'
16129 3' -58.2 NC_004065.1 + 228320 0.66 0.900259
Target:  5'- cGGCGGGUGCuuuGGGcGGUg--GGACGUa -3'
miRNA:   3'- -UUGUCCAUGu--CCCuCCGgcaCCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.