miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16129 5' -60.6 NC_004065.1 + 155591 0.66 0.846155
Target:  5'- -gGCGUGCucGAGGCCaUCCUCugUg--- -3'
miRNA:   3'- agCGCACG--CUCCGG-AGGAGugGgucc -5'
16129 5' -60.6 NC_004065.1 + 82631 0.66 0.846155
Target:  5'- gUUGCGUcCGGGGgcgaaCCUCUgCGCCCAGa -3'
miRNA:   3'- -AGCGCAcGCUCC-----GGAGGaGUGGGUCc -5'
16129 5' -60.6 NC_004065.1 + 101575 0.66 0.846155
Target:  5'- aUCGCGcccGCGGacGCCUCCgccgCGCUCAGa -3'
miRNA:   3'- -AGCGCa--CGCUc-CGGAGGa---GUGGGUCc -5'
16129 5' -60.6 NC_004065.1 + 201022 0.66 0.846155
Target:  5'- cCGCGUGCGcgcGGCg-CCUCGCCa--- -3'
miRNA:   3'- aGCGCACGCu--CCGgaGGAGUGGgucc -5'
16129 5' -60.6 NC_004065.1 + 864 0.66 0.846155
Target:  5'- -aGCGUGUGA-GCUaUCCUC-CCCgAGGa -3'
miRNA:   3'- agCGCACGCUcCGG-AGGAGuGGG-UCC- -5'
16129 5' -60.6 NC_004065.1 + 105765 0.66 0.846155
Target:  5'- -aGCgGUGCGAcggcGGCUUCCcgcgUCGCCCAu- -3'
miRNA:   3'- agCG-CACGCU----CCGGAGG----AGUGGGUcc -5'
16129 5' -60.6 NC_004065.1 + 152823 0.66 0.845403
Target:  5'- aUCGcCGUGCGGGGCgCcgCCgcgCACUuguggcaCAGGa -3'
miRNA:   3'- -AGC-GCACGCUCCG-Ga-GGa--GUGG-------GUCC- -5'
16129 5' -60.6 NC_004065.1 + 25138 0.66 0.838557
Target:  5'- gCGCGgGgGAGGCCUCUcacaguUCcuCCCGGa -3'
miRNA:   3'- aGCGCaCgCUCCGGAGG------AGu-GGGUCc -5'
16129 5' -60.6 NC_004065.1 + 80384 0.66 0.838557
Target:  5'- gCGCGUGCaGGGCCUgCCgacggCGCCg--- -3'
miRNA:   3'- aGCGCACGcUCCGGA-GGa----GUGGgucc -5'
16129 5' -60.6 NC_004065.1 + 137484 0.66 0.830795
Target:  5'- gCGCGUGCGcGcGCCcgCC-CGCCCGu- -3'
miRNA:   3'- aGCGCACGCuC-CGGa-GGaGUGGGUcc -5'
16129 5' -60.6 NC_004065.1 + 535 0.66 0.830795
Target:  5'- -aGCGUGUGAaGCUUCCgcgacgagcggCGCCCGGc -3'
miRNA:   3'- agCGCACGCUcCGGAGGa----------GUGGGUCc -5'
16129 5' -60.6 NC_004065.1 + 27076 0.66 0.830795
Target:  5'- -gGCGacUGUGucGCgUCCUCucCCCAGGa -3'
miRNA:   3'- agCGC--ACGCucCGgAGGAGu-GGGUCC- -5'
16129 5' -60.6 NC_004065.1 + 229511 0.66 0.822874
Target:  5'- aCGCuG-GCGGGGCg-CCUCACCCc-- -3'
miRNA:   3'- aGCG-CaCGCUCCGgaGGAGUGGGucc -5'
16129 5' -60.6 NC_004065.1 + 67565 0.66 0.822874
Target:  5'- cCGC--GCGAGGCCUUCgccgaaGCgCAGGg -3'
miRNA:   3'- aGCGcaCGCUCCGGAGGag----UGgGUCC- -5'
16129 5' -60.6 NC_004065.1 + 133749 0.66 0.822874
Target:  5'- -gGCGUGCGA--CUUCUUCaggcaACCCGGGg -3'
miRNA:   3'- agCGCACGCUccGGAGGAG-----UGGGUCC- -5'
16129 5' -60.6 NC_004065.1 + 109211 0.66 0.822074
Target:  5'- cCGCGUacGCG-GGCCUgUUCACgccgcuguaccguCCGGGg -3'
miRNA:   3'- aGCGCA--CGCuCCGGAgGAGUG-------------GGUCC- -5'
16129 5' -60.6 NC_004065.1 + 105303 0.66 0.814801
Target:  5'- aCGCGUGCGgcgcGGGCCUgaaCCUgaagCACCUgcuGGu -3'
miRNA:   3'- aGCGCACGC----UCCGGA---GGA----GUGGGu--CC- -5'
16129 5' -60.6 NC_004065.1 + 33216 0.66 0.814801
Target:  5'- gUCGCGgGCGAGGUgUCCgCAgaCgAGGg -3'
miRNA:   3'- -AGCGCaCGCUCCGgAGGaGUg-GgUCC- -5'
16129 5' -60.6 NC_004065.1 + 155873 0.66 0.806581
Target:  5'- cCGCcUGCGGGGU--UCUCGgCCCGGGc -3'
miRNA:   3'- aGCGcACGCUCCGgaGGAGU-GGGUCC- -5'
16129 5' -60.6 NC_004065.1 + 138910 0.66 0.806581
Target:  5'- cCGCGcucaGCGAGGCgCUCUucuacuucauguUCACCUccuGGGg -3'
miRNA:   3'- aGCGCa---CGCUCCG-GAGG------------AGUGGG---UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.