miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16129 5' -60.6 NC_004065.1 + 138321 1.11 0.001433
Target:  5'- aUCGCGUGCGAGGCCUCCUCACCCAGGg -3'
miRNA:   3'- -AGCGCACGCUCCGGAGGAGUGGGUCC- -5'
16129 5' -60.6 NC_004065.1 + 24214 0.79 0.197797
Target:  5'- aCGCGguugGCGAGGUUUCgCUCGCgCCAGGa -3'
miRNA:   3'- aGCGCa---CGCUCCGGAG-GAGUG-GGUCC- -5'
16129 5' -60.6 NC_004065.1 + 109846 0.75 0.352275
Target:  5'- gCGCG-GCGucGCUccCCUCACCCAGGu -3'
miRNA:   3'- aGCGCaCGCucCGGa-GGAGUGGGUCC- -5'
16129 5' -60.6 NC_004065.1 + 103753 0.75 0.352275
Target:  5'- uUCGCGcgGCGGGGCCUCCggaccgUCGCgCAGc -3'
miRNA:   3'- -AGCGCa-CGCUCCGGAGG------AGUGgGUCc -5'
16129 5' -60.6 NC_004065.1 + 114043 0.74 0.367168
Target:  5'- -gGCG-GaCGAGcGCCUCUUCGCCCAGa -3'
miRNA:   3'- agCGCaC-GCUC-CGGAGGAGUGGGUCc -5'
16129 5' -60.6 NC_004065.1 + 115847 0.73 0.430924
Target:  5'- cUCGCGgccgGCGGcGCgCUCCUCAgaguCCCGGGa -3'
miRNA:   3'- -AGCGCa---CGCUcCG-GAGGAGU----GGGUCC- -5'
16129 5' -60.6 NC_004065.1 + 209026 0.73 0.43934
Target:  5'- -gGCGUauacCGAGGUCUCCUCACCaucgaCGGGg -3'
miRNA:   3'- agCGCAc---GCUCCGGAGGAGUGG-----GUCC- -5'
16129 5' -60.6 NC_004065.1 + 166518 0.73 0.43934
Target:  5'- cCGCGaggGCGAGGCCaUCCgCACCUGGc -3'
miRNA:   3'- aGCGCa--CGCUCCGG-AGGaGUGGGUCc -5'
16129 5' -60.6 NC_004065.1 + 185246 0.72 0.509797
Target:  5'- -gGUGUGCGgcccAGGCCUcggacgacCCUgGCCCGGGc -3'
miRNA:   3'- agCGCACGC----UCCGGA--------GGAgUGGGUCC- -5'
16129 5' -60.6 NC_004065.1 + 190983 0.71 0.546768
Target:  5'- cCGUGUGCGGGGUcacgaaguaCUgUUCGCCCAGc -3'
miRNA:   3'- aGCGCACGCUCCG---------GAgGAGUGGGUCc -5'
16129 5' -60.6 NC_004065.1 + 37248 0.7 0.575047
Target:  5'- aCGgGUGU-AGGCCUCC-C-CCCGGGu -3'
miRNA:   3'- aGCgCACGcUCCGGAGGaGuGGGUCC- -5'
16129 5' -60.6 NC_004065.1 + 189066 0.7 0.613222
Target:  5'- cUCGCGUggacgucuuccuGCGGGGgCUcgaggaCCUCGCCCGGu -3'
miRNA:   3'- -AGCGCA------------CGCUCCgGA------GGAGUGGGUCc -5'
16129 5' -60.6 NC_004065.1 + 91796 0.7 0.613222
Target:  5'- -gGCG-GCGAGcGCCUCgaCAUCCAGa -3'
miRNA:   3'- agCGCaCGCUC-CGGAGgaGUGGGUCc -5'
16129 5' -60.6 NC_004065.1 + 222703 0.69 0.657342
Target:  5'- cCGCGUcCGGuaccaccGGCucgaucgucaggagCUCCUCGCCCGGGa -3'
miRNA:   3'- aGCGCAcGCU-------CCG--------------GAGGAGUGGGUCC- -5'
16129 5' -60.6 NC_004065.1 + 105922 0.68 0.708598
Target:  5'- aUCGCG-GCGcugagccggauGGGCCUg--CACCCGGGc -3'
miRNA:   3'- -AGCGCaCGC-----------UCCGGAggaGUGGGUCC- -5'
16129 5' -60.6 NC_004065.1 + 229153 0.68 0.708598
Target:  5'- aUGcCG-GCGGGGCgC-CCUCGCCCGGc -3'
miRNA:   3'- aGC-GCaCGCUCCG-GaGGAGUGGGUCc -5'
16129 5' -60.6 NC_004065.1 + 76717 0.68 0.708598
Target:  5'- gCGCGU-CGAGGUugcaCUCCUCGgCgGGGa -3'
miRNA:   3'- aGCGCAcGCUCCG----GAGGAGUgGgUCC- -5'
16129 5' -60.6 NC_004065.1 + 222569 0.68 0.708598
Target:  5'- gUCGgugGUGCccaAGGUCUCCUCGCCCGc- -3'
miRNA:   3'- -AGCg--CACGc--UCCGGAGGAGUGGGUcc -5'
16129 5' -60.6 NC_004065.1 + 52876 0.68 0.717942
Target:  5'- aCGCuccuccgauCGAGGCCaguUCCUC-CCCAGGa -3'
miRNA:   3'- aGCGcac------GCUCCGG---AGGAGuGGGUCC- -5'
16129 5' -60.6 NC_004065.1 + 228064 0.68 0.717942
Target:  5'- -aGCGU-CG-GGCCUcCCUCAUCaCGGGg -3'
miRNA:   3'- agCGCAcGCuCCGGA-GGAGUGG-GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.